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NM_000551.4(VHL):c.413C>T (p.Pro138Leu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 20, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001759686.2

Allele description [Variation Report for NM_000551.4(VHL):c.413C>T (p.Pro138Leu)]

NM_000551.4(VHL):c.413C>T (p.Pro138Leu)

Genes:
LOC107303340:3p25 von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase Alu-mediated recombination region [Gene]
VHL:von Hippel-Lindau tumor suppressor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p25.3
Genomic location:
Preferred name:
NM_000551.4(VHL):c.413C>T (p.Pro138Leu)
HGVS:
  • NC_000003.12:g.10146586C>T
  • NG_008212.3:g.9952C>T
  • NG_046756.1:g.4348C>T
  • NM_000551.4:c.413C>TMANE SELECT
  • NM_001354723.2:c.*18-3201C>T
  • NM_198156.3:c.341-3201C>T
  • NP_000542.1:p.Pro138Leu
  • LRG_322t1:c.413C>T
  • LRG_322:g.9952C>T
  • NC_000003.11:g.10188270C>T
  • NM_000551.3:c.413C>T
Protein change:
P138L; PRO138LEU
Links:
OMIM: 608537.0035; dbSNP: rs780178275
NCBI 1000 Genomes Browser:
rs780178275
Molecular consequence:
  • NM_001354723.2:c.*18-3201C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_198156.3:c.341-3201C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000551.4:c.413C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001986076GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Aug 20, 2019)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001986076.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at a significant frequency in large population cohorts (Lek et al., 2016); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; This variant is associated with the following publications: (PMID: 26224408, 24729484, 23538339, 24115288, 29891534)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024