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NM_001105244.2(PTPRM):c.1749A>G (p.Ile583Met) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 17, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001775489.1

Allele description [Variation Report for NM_001105244.2(PTPRM):c.1749A>G (p.Ile583Met)]

NM_001105244.2(PTPRM):c.1749A>G (p.Ile583Met)

Gene:
PTPRM:protein tyrosine phosphatase receptor type M [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
18p11.23
Genomic location:
Preferred name:
NM_001105244.2(PTPRM):c.1749A>G (p.Ile583Met)
HGVS:
  • NC_000018.10:g.8085868A>G
  • NM_001105244.2:c.1749A>GMANE SELECT
  • NM_001378142.1:c.1110A>G
  • NM_001378143.1:c.1110A>G
  • NM_001378144.1:c.1110A>G
  • NM_001378145.1:c.1110A>G
  • NM_001378146.1:c.1110A>G
  • NM_001378147.1:c.1110A>G
  • NM_002845.4:c.1749A>G
  • NP_001098714.1:p.Ile583Met
  • NP_001365071.1:p.Ile370Met
  • NP_001365072.1:p.Ile370Met
  • NP_001365073.1:p.Ile370Met
  • NP_001365074.1:p.Ile370Met
  • NP_001365075.1:p.Ile370Met
  • NP_001365076.1:p.Ile370Met
  • NP_002836.3:p.Ile583Met
  • NC_000018.9:g.8085866A>G
  • NM_002845.3:c.1749A>G
Protein change:
I370M
Links:
dbSNP: rs2090405367
NCBI 1000 Genomes Browser:
rs2090405367
Molecular consequence:
  • NM_001105244.2:c.1749A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378142.1:c.1110A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378143.1:c.1110A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378144.1:c.1110A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378145.1:c.1110A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378146.1:c.1110A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378147.1:c.1110A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002845.4:c.1749A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002012495HudsonAlpha Institute for Biotechnology, HudsonAlpha Institute for Biotechnology - CSER-SouthSeq
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Feb 17, 2021)
unknownresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknown1not providednot provided1not providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From HudsonAlpha Institute for Biotechnology, HudsonAlpha Institute for Biotechnology - CSER-SouthSeq, SCV002012495.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)

Description

ACMG codes: PM2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknown1not providednot provided1not providednot providednot provided

Last Updated: Dec 24, 2023