NM_002655.3(PLAG1):c.758dup (p.Phe254fs) AND Silver-russell syndrome 4

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 8, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001785361.1

Allele description [Variation Report for NM_002655.3(PLAG1):c.758dup (p.Phe254fs)]

NM_002655.3(PLAG1):c.758dup (p.Phe254fs)

Genes:

LOC126860395:BRD4-independent group 4 enhancer GRCh37_chr8:57079228-57080427 [Gene]
PLAG1:PLAG1 zinc finger [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

8q12.1

Genomic location:

Preferred name:

NM_002655.3(PLAG1):c.758dup (p.Phe254fs)

HGVS:

NC_000008.11:g.56166990dup
NG_023310.1:g.49313dup
NM_001114634.2:c.758dup
NM_001114635.2:c.512dup
NM_002655.3:c.758dupMANE SELECT
NP_001108106.1:p.Phe254fs
NP_001108107.1:p.Phe172fs
NP_002646.2:p.Phe254fs
NC_000008.10:g.57079549dup

Protein change:

F172fs

Links:

dbSNP: rs2129224472

NCBI 1000 Genomes Browser:

rs2129224472

Molecular consequence:

NM_001114634.2:c.758dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001114635.2:c.512dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_002655.3:c.758dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Silver-russell syndrome 4
Identifiers:: MONDO: MONDO:0030118; MedGen: C5394450; OMIM: 618907

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002026376	Institute of Human Genetics, University of Leipzig Medical Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Nov 8, 2021)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002026376

Institute of Human Genetics, University of Leipzig Medical Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Nov 8, 2021)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Institute of Human Genetics, University of Leipzig Medical Center, SCV002026376.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

_x000D_ Criteria applied: PVS1_STR, PM2_SUP

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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