NM_005120.3(MED12):c.5834C>G (p.Thr1945Ser) AND X-linked intellectual disability with marfanoid habitus

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 28, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001809148.1

Allele description [Variation Report for NM_005120.3(MED12):c.5834C>G (p.Thr1945Ser)]

NM_005120.3(MED12):c.5834C>G (p.Thr1945Ser)

Gene:

MED12:mediator complex subunit 12 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xq13.1

Genomic location:

Preferred name:

NM_005120.3(MED12):c.5834C>G (p.Thr1945Ser)

HGVS:

NC_000023.11:g.71137733C>G
NG_012808.1:g.24178C>G
NM_005120.3:c.5834C>GMANE SELECT
NP_005111.2:p.Thr1945Ser
NC_000023.10:g.70357583C>G
NM_005120.2:c.5834C>G

Protein change:

T1945S

Links:

dbSNP: rs2147830593

NCBI 1000 Genomes Browser:

rs2147830593

Molecular consequence:

NM_005120.3:c.5834C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: X-linked intellectual disability with marfanoid habitus
Synonyms:: Mental retardation, X-linked, with marfanoid habitus; Marfanoid habitus, mild general hypotonia, hypernasal voice, normal testicular size and distinct craniofacial anomalies; X-linked mental retardation with marfanoid habitus syndrome; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0010655; MedGen: C0796022; Orphanet: 776; OMIM: 309520

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002059581	Centogene AG - the Rare Disease Company	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Dec 28, 2020)	maternal	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002059581

Centogene AG - the Rare Disease Company

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Dec 28, 2020)

maternal

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	maternal	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Centogene AG - the Rare Disease Company, SCV002059581.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	maternal	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 28, 2024

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