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NM_014319.5(LEMD3):c.1808_1812del (p.Thr603fs) AND Dermatofibrosis lenticularis disseminata

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 26, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001814821.4

Allele description [Variation Report for NM_014319.5(LEMD3):c.1808_1812del (p.Thr603fs)]

NM_014319.5(LEMD3):c.1808_1812del (p.Thr603fs)

Gene:
LEMD3:LEM domain containing 3 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
12q14.3
Genomic location:
Preferred name:
NM_014319.5(LEMD3):c.1808_1812del (p.Thr603fs)
HGVS:
  • NC_000012.12:g.65238701_65238705del
  • NG_016210.2:g.74131_74135del
  • NM_001167614.2:c.1805_1809del
  • NM_014319.5:c.1808_1812delMANE SELECT
  • NP_001161086.1:p.Thr602fs
  • NP_055134.2:p.Thr603fs
  • NC_000012.11:g.65632481_65632485del
Protein change:
T602fs
Links:
dbSNP: rs2136353868
NCBI 1000 Genomes Browser:
rs2136353868
Molecular consequence:
  • NM_001167614.2:c.1805_1809del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_014319.5:c.1808_1812del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Dermatofibrosis lenticularis disseminata (BOS)
Synonyms:
Dermatoosteopoikilosis; Dermatofibrosis, disseminated with osteopoikilosis; Dermatofibrosis lenticularis disseminata with osteopoikilosis; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008157; MedGen: C0265514; Orphanet: 1306; OMIM: 166700

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002061653Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Oct 26, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center, SCV002061653.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PVS1, PM2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 28, 2024