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NM_012200.4(B3GAT3):c.245C>T (p.Pro82Leu) AND Larsen-like syndrome, B3GAT3 type

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 29, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001844323.3

Allele description [Variation Report for NM_012200.4(B3GAT3):c.245C>T (p.Pro82Leu)]

NM_012200.4(B3GAT3):c.245C>T (p.Pro82Leu)

Gene:
B3GAT3:beta-1,3-glucuronyltransferase 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q12.3
Genomic location:
Preferred name:
NM_012200.4(B3GAT3):c.245C>T (p.Pro82Leu)
HGVS:
  • NC_000011.10:g.62620509G>A
  • NG_031863.1:g.6667C>T
  • NM_001288721.2:c.224C>T
  • NM_001288722.2:c.245C>T
  • NM_001288723.2:c.245C>T
  • NM_012200.4:c.245C>TMANE SELECT
  • NP_001275650.1:p.Pro75Leu
  • NP_001275651.1:p.Pro82Leu
  • NP_001275652.1:p.Pro82Leu
  • NP_036332.2:p.Pro82Leu
  • NC_000011.9:g.62387981G>A
  • NR_109991.2:n.274C>T
Protein change:
P75L
Links:
dbSNP: rs755601885
NCBI 1000 Genomes Browser:
rs755601885
Molecular consequence:
  • NM_001288721.2:c.224C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001288722.2:c.245C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001288723.2:c.245C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_012200.4:c.245C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_109991.2:n.274C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Larsen-like syndrome, B3GAT3 type
Synonyms:
LARSEN SYNDROME, AUTOSOMAL RECESSIVE; Multiple joint dislocations, short stature, craniofacial dysmorphism, and congenital heart defects; MULTIPLE JOINT DISLOCATIONS, SHORT STATURE, AND CRANIOFACIAL DYSMORPHISM WITH OR WITHOUT CONGENITAL HEART DEFECTS
Identifiers:
MONDO: MONDO:0009511; MedGen: C3278404; Orphanet: 284139; OMIM: 245600

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001870444Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center
no assertion criteria provided
Pathogenic
(Apr 29, 2021)
germlineresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center, SCV001870444.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 4, 2024