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NM_000371.4(TTR):c.114T>A (p.Asp38Glu) AND Familial amyloid neuropathy

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 5, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001904544.3

Allele description [Variation Report for NM_000371.4(TTR):c.114T>A (p.Asp38Glu)]

NM_000371.4(TTR):c.114T>A (p.Asp38Glu)

Gene:
TTR:transthyretin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
18q12.1
Genomic location:
Preferred name:
NM_000371.4(TTR):c.114T>A (p.Asp38Glu)
HGVS:
  • NC_000018.10:g.31592940T>A
  • NG_009490.1:g.6174T>A
  • NM_000371.3:c.114T>A
  • NM_000371.4:c.114T>AMANE SELECT
  • NP_000362.1:p.Asp38Glu
  • LRG_416t1:c.114T>A
  • LRG_416:g.6174T>A
  • NC_000018.9:g.29172903T>A
Protein change:
D38E
Links:
dbSNP: rs779619795
NCBI 1000 Genomes Browser:
rs779619795
Molecular consequence:
  • NM_000371.4:c.114T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Familial amyloid neuropathy
Synonyms:
Amyloidosis Transthyretin related; Amyloid polyneuropathy transthyretin related; TTR amyloid neuropathy; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007100; MedGen: C2751492; Orphanet: 85447; Orphanet: 85451; OMIM: 105210

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002123093Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(Nov 5, 2021)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Meningocerebrovascular amyloidosis associated with a novel transthyretin mis-sense mutation at codon 18 (TTRD 18G)

Vidal R, Garzuly F, Budka H, Lalowski M, Linke RP, Brittig F, Frangione B, Wisniewski T.

Am J Pathol. 1996 Feb;148(2):361-6.

PubMed [citation]
PMID:
8579098
PMCID:
PMC1861701

The biological and chemical basis for tissue-selective amyloid disease.

Sekijima Y, Wiseman RL, Matteson J, Hammarström P, Miller SR, Sawkar AR, Balch WE, Kelly JW.

Cell. 2005 Apr 8;121(1):73-85.

PubMed [citation]
PMID:
15820680
See all PubMed Citations (7)

Details of each submission

From Invitae, SCV002123093.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Asp38 amino acid residue in TTR. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 8579098, 15820680, 20209591; Invitae). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt TTR protein function. This variant is also known as p.D18E. This missense change has been observed in individual(s) with familial transthyretin amyloidosis (PMID: 7599630, 23713495, 26656838). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces aspartic acid, which is acidic and polar, with glutamic acid, which is acidic and polar, at codon 38 of the TTR protein (p.Asp38Glu).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024