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NM_002317.7(LOX):c.1035G>A (p.Gln345=) AND Aortic aneurysm, familial thoracic 10

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
May 17, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002074423.1

Allele description [Variation Report for NM_002317.7(LOX):c.1035G>A (p.Gln345=)]

NM_002317.7(LOX):c.1035G>A (p.Gln345=)

Genes:
LOX:lysyl oxidase [Gene - OMIM - HGNC]
SRFBP1:serum response factor binding protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q23.1
Genomic location:
Preferred name:
NM_002317.7(LOX):c.1035G>A (p.Gln345=)
HGVS:
  • NC_000005.10:g.122074013C>T
  • NG_008722.1:g.9348G>A
  • NM_001178102.2:c.345G>A
  • NM_001317073.1:c.144G>A
  • NM_002317.7:c.1035G>AMANE SELECT
  • NP_001171573.1:p.Gln115=
  • NP_001304002.1:p.Gln48=
  • NP_002308.2:p.Gln345=
  • NC_000005.9:g.121409708C>T
Links:
dbSNP: rs2152589500
NCBI 1000 Genomes Browser:
rs2152589500
Molecular consequence:
  • NM_001178102.2:c.345G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001317073.1:c.144G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_002317.7:c.1035G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Name:
Aortic aneurysm, familial thoracic 10 (AAT10)
Identifiers:
MONDO: MONDO:0014950; MedGen: C4284414; OMIM: 617168

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002496159Institute of Human Genetics, University Hospital Muenster
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(May 17, 2020)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Institute of Human Genetics, University Hospital Muenster, SCV002496159.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

ACMG categories: PS5,PM2,PP3

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providedbloodnot provided1not providednot providednot provided

Last Updated: Mar 5, 2024