NM_001366385.1(CARD14):c.1978+15C>A AND multiple conditions

Germline classification:: Likely benign (1 submission)
Last evaluated:: Aug 11, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002080921.6

Allele description [Variation Report for NM_001366385.1(CARD14):c.1978+15C>A]

NM_001366385.1(CARD14):c.1978+15C>A

Genes:

SGSH:N-sulfoglucosamine sulfohydrolase [Gene - OMIM - HGNC]
CARD14:caspase recruitment domain family member 14 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17q25.3

Genomic location:

Preferred name:

NM_001366385.1(CARD14):c.1978+15C>A

HGVS:

NC_000017.11:g.80201885C>A
NG_032778.1:g.36894C>A
NM_001257970.1:c.1978+15C>A
NM_001366385.1:c.1978+15C>AMANE SELECT
NM_024110.4:c.1978+15C>A
LRG_1330t1:c.1978+15C>A
LRG_1330:g.36894C>A
NC_000017.10:g.78175684C>A

Links:

dbSNP: rs774496431

NCBI 1000 Genomes Browser:

rs774496431

Molecular consequence:

NM_001257970.1:c.1978+15C>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001366385.1:c.1978+15C>A - intron variant - [Sequence Ontology: SO:0001627]
NM_024110.4:c.1978+15C>A - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Pityriasis rubra pilaris (PRP)
Synonyms:: Pityriasis rubra pilaris--familial type
Identifiers:: MONDO: MONDO:0100017; MedGen: C0032027; Orphanet: 2897; OMIM: 173200

Name:: Psoriasis 2
Identifiers:: MONDO: MONDO:0011269; MedGen: C1864497; OMIM: 602723

Recent activity

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RecName: Full=ATP synthase protein 8; AltName: Full=A6L; AltName: Full=F-ATPase ...
RecName: Full=ATP synthase protein 8; AltName: Full=A6L; AltName: Full=F-ATPase subunit 8
gi|12585178|sp|Q9XMI9.1|ATP8_ORYAF

Protein
txid9834[Organism] (183720)
Identical Protein Groups
RecName: Full=CUB and zona pellucida-like domain-containing protein 1; Short=CUB...
RecName: Full=CUB and zona pellucida-like domain-containing protein 1; Short=CUB and ZP domain-containing protein 1; AltName: Full=Integral membrane-associated protein 1; Flags: Precursor
gi|2203400753|sp|P70412.3|CUZD1_MOU

Protein
RecName: Full=Potassium voltage-gated channel subfamily A member 3; AltName: Ful...
RecName: Full=Potassium voltage-gated channel subfamily A member 3; AltName: Full=MK3; AltName: Full=Voltage-gated potassium channel subunit Kv1.3
gi|215274145|sp|P16390.3|KCNA3_MOUS

Protein
Rhizopus oryzae RA 99-880 supercont3.35 genomic scaffold, whole genome shotgun s...
Rhizopus oryzae RA 99-880 supercont3.35 genomic scaffold, whole genome shotgun sequence
gi|238528582|gb|GG669517.1||gnl|WGS |supercont3.35

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002372429	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Aug 11, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002372429

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Aug 11, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002372429.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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