NM_001105206.3(LAMA4):c.2874A>G (p.Glu958=) AND Dilated cardiomyopathy 1JJ

Germline classification:: Likely benign (1 submission)
Last evaluated:: Oct 14, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002169055.6

Allele description [Variation Report for NM_001105206.3(LAMA4):c.2874A>G (p.Glu958=)]

NM_001105206.3(LAMA4):c.2874A>G (p.Glu958=)

Genes:

LOC126859766:MED14-independent group 3 enhancer GRCh37_chr6:112462018-112463217 [Gene]
LAMA4:laminin subunit alpha 4 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

6q21

Genomic location:

Preferred name:

NM_001105206.3(LAMA4):c.2874A>G (p.Glu958=)

HGVS:

NC_000006.12:g.112140862T>C
NG_008209.1:g.118765A>G
NM_001105206.3:c.2874A>GMANE SELECT
NM_001105207.3:c.2853A>G
NM_002290.5:c.2853A>G
NP_001098676.2:p.Glu958=
NP_001098677.2:p.Glu951=
NP_002281.3:p.Glu951=
LRG_433:g.118765A>G
NC_000006.11:g.112462064T>C

Links:

dbSNP: rs1779650229

NCBI 1000 Genomes Browser:

rs1779650229

Molecular consequence:

NM_001105206.3:c.2874A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001105207.3:c.2853A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_002290.5:c.2853A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Dilated cardiomyopathy 1JJ (CMD1JJ)
Identifiers:: MONDO: MONDO:0014095; MedGen: C3808935; Orphanet: 154; OMIM: 615235

Recent activity

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conserved hypothetical protein [Streptomyces scabiei 87.22]
conserved hypothetical protein [Streptomyces scabiei 87.22]
gi|260652891|emb|CBG76026.1|

Protein
putative integrase core domain [Streptomyces scabiei 87.22]
putative integrase core domain [Streptomyces scabiei 87.22]
gi|260652890|emb|CBG76025.1|

Protein
putative transposase [Streptomyces scabiei 87.22]
putative transposase [Streptomyces scabiei 87.22]
gi|260652889|emb|CBG76024.1|

Protein
BSU_36499 [Bacillus subtilis subsp. subtilis str. 168]
BSU_36499 [Bacillus subtilis subsp. subtilis str. 168]
Gene ID:37862968

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002478455	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Oct 14, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002478455

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Oct 14, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002478455.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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