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NM_005612.5(REST):c.1244G>C (p.Cys415Ser) AND Autosomal dominant nonsyndromic hearing loss 27

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 22, 2022
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002248339.1

Allele description [Variation Report for NM_005612.5(REST):c.1244G>C (p.Cys415Ser)]

NM_005612.5(REST):c.1244G>C (p.Cys415Ser)

Gene:
REST:RE1 silencing transcription factor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q12
Genomic location:
Preferred name:
NM_005612.5(REST):c.1244G>C (p.Cys415Ser)
HGVS:
  • NC_000004.12:g.56930102G>C
  • NG_029447.1:g.27227G>C
  • NM_001193508.1:c.1244G>C
  • NM_001363453.2:c.1244G>C
  • NM_005612.5:c.1244G>CMANE SELECT
  • NP_001180437.1:p.Cys415Ser
  • NP_001350382.1:p.Cys415Ser
  • NP_005603.3:p.Cys415Ser
  • NC_000004.11:g.57796268G>C
Protein change:
C415S; CYS415SER
Links:
OMIM: 600571.0008; dbSNP: rs2109573013
NCBI 1000 Genomes Browser:
rs2109573013
Molecular consequence:
  • NM_001193508.1:c.1244G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363453.2:c.1244G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005612.5:c.1244G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Autosomal dominant nonsyndromic hearing loss 27
Synonyms:
Deafness, autosomal dominant 27
Identifiers:
MONDO: MONDO:0012902; MedGen: C3887929; Orphanet: 90635; OMIM: 612431

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002520420OMIM
no assertion criteria provided
Pathogenic
(Apr 22, 2022)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A Monoallelic Variant in REST Is Associated with Non-Syndromic Autosomal Dominant Hearing Impairment in a South African Family.

Manyisa N, Schrauwen I, de Souza Rios LA, Mowla S, Tekendo-Ngongang C, Popel K, Esoh K, Bharadwaj T, Nouel-Saied LM, Acharya A, Nasir A, Wonkam-Tingang E, Kock C, Dandara C, Leal SM, Wonkam A.

Genes (Basel). 2021 Nov 6;12(11). doi:pii: 1765. 10.3390/genes12111765.

PubMed [citation]
PMID:
34828371
PMCID:
PMC8618167

Details of each submission

From OMIM, SCV002520420.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a South African Xhosa mother and son with progressive prelingual sensorineural hearing loss (DFNA27; 612431), Manyisa et al. (2021) identified heterozygosity for a c.1244G-C transversion (c.1244G-C, NM_005612.5) in exon 4 of the REST gene, resulting in a cys415-to-ser (C415S) substitution at a highly conserved residue. The mutation was not found in the proband's unaffected half-brother or unaffected maternal grandmother, in 103 black South African controls or 52 sporadic South African probands of black or mixed ancestry with nonsyndromic hearing impairment, or in the gnomAD, UK10K, Greater Middle East Variome (GME), or dbSNP databases. Experiments using GFP tagging in HEK293 cells showed that the wildtype REST protein is located exclusively within the nucleus, whereas the mutant showed localization throughout the cell, indicating loss of exclusive nuclear shuttling/localization. In addition, wildtype REST competently repressed transcription of the known REST target AF1Q (604684) in transiently transfected HEK293 cells, whereas transcriptional repression was lost in cells expressing the mutant REST protein.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023