NM_033629.6(TREX1):c.150_151del (p.Gln51fs) AND See cases

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Nov 11, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002253147.2

Allele description [Variation Report for NM_033629.6(TREX1):c.150_151del (p.Gln51fs)]

NM_033629.6(TREX1):c.150_151del (p.Gln51fs)

Genes:

ATRIP:ATR interacting protein [Gene - OMIM - HGNC]
ATRIP-TREX1:ATRIP-TREX1 readthrough [Gene]
TREX1:three prime repair exonuclease 1 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

3p21.31

Genomic location:

Preferred name:

NM_033629.6(TREX1):c.150_151del (p.Gln51fs)

Other names:

NM_016381.5:c.312_313del

HGVS:

NC_000003.12:g.48466803TC[1]
NG_009820.2:g.5974TC[1]
NG_033100.1:g.39056AG[1]
NG_033100.2:g.43005AG[1]
NG_041782.1:g.25094TC[1]
NG_099339.1:g.746TC[1]
NM_001271022.2:c.*1249TC[1]
NM_001271023.2:c.*1249TC[1]
NM_007248.5:c.120_121del
NM_032166.4:c.*1249TC[1]
NM_033629.6:c.150_151delMANE SELECT
NM_130384.3:c.*1249TC[1]MANE SELECT
NP_009179.2:p.Gln41fs
NP_338599.1:p.Gln51Glyfs
NP_338599.1:p.Gln51fs
LRG_282t1:c.150_151del
LRG_282:g.5974TC[1]
LRG_282p1:p.Gln51fs
NC_000003.11:g.48508201_48508202del
NC_000003.11:g.48508202TC[1]
NM_033629.4:c.148_149TC[1]
NR_153405.1:n.3457TC[1]

Protein change:

Q41fs

Links:

dbSNP: rs770607110

NCBI 1000 Genomes Browser:

rs770607110

Molecular consequence:

NM_001271022.2:c.*1249TC[1] - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001271023.2:c.*1249TC[1] - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_032166.4:c.*1249TC[1] - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_130384.3:c.*1249TC[1] - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_007248.5:c.120_121del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_033629.6:c.150_151del - frameshift variant - [Sequence Ontology: SO:0001589]
NR_153405.1:n.3457TC[1] - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: See cases [See the Variation display for details]
Identifiers:

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002523341	Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Nov 11, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002523341

Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Nov 11, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein, SCV002523341.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

ACMG classification criteria: PVS1, PM2, PP4

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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