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NM_006772.3(SYNGAP1):c.1861C>T (p.Arg621Ter) AND Neurodevelopmental delay

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002274036.2

Allele description [Variation Report for NM_006772.3(SYNGAP1):c.1861C>T (p.Arg621Ter)]

NM_006772.3(SYNGAP1):c.1861C>T (p.Arg621Ter)

Genes:
SYNGAP1-AS1:SYNGAP1 antisense RNA 1 [Gene - HGNC]
SYNGAP1:synaptic Ras GTPase activating protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.32
Genomic location:
Preferred name:
NM_006772.3(SYNGAP1):c.1861C>T (p.Arg621Ter)
HGVS:
  • NC_000006.12:g.33440913C>T
  • NG_016137.2:g.25844C>T
  • NM_001130066.2:c.1861C>T
  • NM_006772.3:c.1861C>TMANE SELECT
  • NP_001123538.1:p.Arg621Ter
  • NP_006763.2:p.Arg621Ter
  • LRG_1193t1:c.1861C>T
  • LRG_1193:g.25844C>T
  • LRG_1193p1:p.Arg621Ter
  • NC_000006.11:g.33408690C>T
  • NM_006772.2:c.1861C>T
Protein change:
R621*
Links:
dbSNP: rs1060503386
NCBI 1000 Genomes Browser:
rs1060503386
Molecular consequence:
  • NM_001130066.2:c.1861C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_006772.3:c.1861C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Neurodevelopmental delay
Identifiers:
MedGen: C4022738; Human Phenotype Ontology: HP:0012758

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002559123Centre de Biologie Pathologie Génétique, Centre Hospitalier Universitaire de Lille
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenicde novoclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Centre de Biologie Pathologie Génétique, Centre Hospitalier Universitaire de Lille, SCV002559123.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024