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NM_024426.6(WT1):c.1322A>T (p.Asp441Val) AND Nephrotic syndrome, type 4

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jan 14, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002287768.1

Allele description [Variation Report for NM_024426.6(WT1):c.1322A>T (p.Asp441Val)]

NM_024426.6(WT1):c.1322A>T (p.Asp441Val)

Gene:
WT1:WT1 transcription factor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p13
Genomic location:
Preferred name:
NM_024426.6(WT1):c.1322A>T (p.Asp441Val)
HGVS:
  • NC_000011.10:g.32392698T>A
  • NG_009272.1:g.47844A>T
  • NM_000378.6:c.1271A>T
  • NM_001198551.2:c.671A>T
  • NM_001198552.2:c.620A>T
  • NM_001367854.1:c.134A>T
  • NM_001407044.1:c.1316A>T
  • NM_001407045.1:c.1271A>T
  • NM_001407046.1:c.1322A>T
  • NM_001407047.1:c.1199A>T
  • NM_001407049.1:c.1271A>T
  • NM_001407050.1:c.1148A>T
  • NM_001407051.1:c.560A>T
  • NM_024424.5:c.1322A>T
  • NM_024425.2:c.1256A>T
  • NM_024426.6:c.1322A>TMANE SELECT
  • NP_000369.4:p.Asp424Val
  • NP_001185480.1:p.Asp224Val
  • NP_001185480.1:p.Asp224Val
  • NP_001185481.1:p.Asp207Val
  • NP_001354783.1:p.Asp45Val
  • NP_001393973.1:p.Asp439Val
  • NP_001393974.1:p.Asp424Val
  • NP_001393975.1:p.Asp441Val
  • NP_001393976.1:p.Asp400Val
  • NP_001393978.1:p.Asp424Val
  • NP_001393979.1:p.Asp383Val
  • NP_001393980.1:p.Asp187Val
  • NP_077742.3:p.Asp441Val
  • NP_077743.2:p.Asp419Val
  • NP_077744.3:p.Asp436Val
  • NP_077744.4:p.Asp441Val
  • LRG_525t1:c.1307A>T
  • LRG_525t2:c.671A>T
  • LRG_525:g.47844A>T
  • LRG_525p1:p.Asp436Val
  • LRG_525p2:p.Asp224Val
  • NC_000011.9:g.32414244T>A
  • NM_001198551.1:c.671A>T
  • NM_024426.3:c.1307A>T
  • NR_160306.1:n.1654A>T
  • NR_176266.1:n.1603A>T
Protein change:
D187V
Molecular consequence:
  • NM_000378.6:c.1271A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001198551.2:c.671A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001198552.2:c.620A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001367854.1:c.134A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407044.1:c.1316A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407045.1:c.1271A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407046.1:c.1322A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407047.1:c.1199A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407049.1:c.1271A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407050.1:c.1148A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407051.1:c.560A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024424.5:c.1322A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024425.2:c.1256A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024426.6:c.1322A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_160306.1:n.1654A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
1

Condition(s)

Name:
Nephrotic syndrome, type 4 (NPHS4)
Synonyms:
Familial mesangial sclerosis; Nephrotic syndrome, early onset with diffuse mesangial sclerosis
Identifiers:
MONDO: MONDO:0009733; MedGen: C3151568; Orphanet: 656; OMIM: 256370

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002577981Institute of Human Genetics, University Hospital Muenster
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Jan 14, 2022) 		de novoclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Institute of Human Genetics, University Hospital Muenster, SCV002577981.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

ACMG categories: PS2,PM2,PP3,PP4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providedbloodnot provided1not providednot providednot provided

Last Updated: Nov 5, 2022