U.S. flag

An official website of the United States government

NM_004371.4(COPA):c.1663A>G (p.Thr555Ala) AND Chronic lung disease

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 9, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002287810.1

Allele description [Variation Report for NM_004371.4(COPA):c.1663A>G (p.Thr555Ala)]

NM_004371.4(COPA):c.1663A>G (p.Thr555Ala)

Gene:
COPA:COPI coat complex subunit alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q23.2
Genomic location:
Preferred name:
NM_004371.4(COPA):c.1663A>G (p.Thr555Ala)
HGVS:
  • NC_000001.11:g.160305437T>C
  • NG_050927.1:g.43128A>G
  • NM_001098398.2:c.1690A>G
  • NM_004371.4:c.1663A>GMANE SELECT
  • NP_001091868.1:p.Thr564Ala
  • NP_004362.2:p.Thr555Ala
  • LRG_1336t1:c.1663A>G
  • LRG_1336:g.43128A>G
  • LRG_1336p1:p.Thr555Ala
  • NC_000001.10:g.160275227T>C
Protein change:
T555A
Molecular consequence:
  • NM_001098398.2:c.1690A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004371.4:c.1663A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Chronic lung disease
Identifiers:
MedGen: C0746102; Human Phenotype Ontology: HP:0006528

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002578067Institute of Human Genetics, University Hospital Muenster
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Dec 9, 2021)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Institute of Human Genetics, University Hospital Muenster, SCV002578067.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

ACMG categories: PM1,PM2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providedbloodnot provided1not providednot providednot provided

Last Updated: Oct 15, 2022