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NM_003602.5(FKBP6):c.589-2A>G AND Male infertility

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 12, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002307842.1

Allele description [Variation Report for NM_003602.5(FKBP6):c.589-2A>G]

NM_003602.5(FKBP6):c.589-2A>G

Gene:
FKBP6:FKBP prolyl isomerase family member 6 (inactive) [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q11.23
Genomic location:
Preferred name:
NM_003602.5(FKBP6):c.589-2A>G
HGVS:
  • NC_000007.14:g.73340636A>G
  • NG_023242.2:g.17481A>G
  • NM_001135211.3:c.574-2A>G
  • NM_001281304.2:c.499-2A>G
  • NM_001362789.2:c.454-2A>G
  • NM_003602.5:c.589-2A>GMANE SELECT
  • NC_000007.13:g.72754638A>G
  • NM_003602.4:c.589-2A>G
Nucleotide change:
IVS5, A-G, -2
Links:
OMIM: 604839.0005
Molecular consequence:
  • NM_001135211.3:c.574-2A>G - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001281304.2:c.499-2A>G - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001362789.2:c.454-2A>G - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_003602.5:c.589-2A>G - splice acceptor variant - [Sequence Ontology: SO:0001574]

Condition(s)

Name:
Male infertility
Identifiers:
MONDO: MONDO:0005372; MedGen: C0021364; Human Phenotype Ontology: HP:0003251

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002507290Institute of Reproductive Genetics, University of Münster
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(May 12, 2022) 		germlineresearch

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Arabgermlineyes1not providednot providednot providednot providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Institute of Reproductive Genetics, University of Münster, SCV002507290.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Arab1not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Jun 10, 2023