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NM_000089.4(COL1A2):c.910G>A (p.Gly304Ser) AND Cardiovascular phenotype

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Mar 19, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002375009.9

Allele description [Variation Report for NM_000089.4(COL1A2):c.910G>A (p.Gly304Ser)]

NM_000089.4(COL1A2):c.910G>A (p.Gly304Ser)

Gene:
COL1A2:collagen type I alpha 2 chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q21.3
Genomic location:
Preferred name:
NM_000089.4(COL1A2):c.910G>A (p.Gly304Ser)
HGVS:
  • NC_000007.14:g.94409582G>A
  • NG_007405.1:g.20022G>A
  • NM_000089.4:c.910G>AMANE SELECT
  • NP_000080.2:p.Gly304Ser
  • LRG_2t1:c.910G>A
  • LRG_2:g.20022G>A
  • NC_000007.13:g.94038894G>A
  • NM_000089.3:c.910G>A
Protein change:
G304S
Links:
dbSNP: rs1054264002
NCBI 1000 Genomes Browser:
rs1054264002
Molecular consequence:
  • NM_000089.4:c.910G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002685964Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Likely pathogenic
(Mar 19, 2021)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

[Osteogenesis imperfecta].

Kaux JF, Le Goff C, Debray FG, Crielaard JM, Reginster JY.

Rev Med Liege. 2009 Jan;64(1):11-5. French.

PubMed [citation]
PMID:
19317096

Genotype-phenotype correlation study in 364 osteogenesis imperfecta Italian patients.

Maioli M, Gnoli M, Boarini M, Tremosini M, Zambrano A, Pedrini E, Mordenti M, Corsini S, D'Eufemia P, Versacci P, Celli M, Sangiorgi L.

Eur J Hum Genet. 2019 Jul;27(7):1090-1100. doi: 10.1038/s41431-019-0373-x. Epub 2019 Mar 18.

PubMed [citation]
PMID:
30886339
PMCID:
PMC6777444

Details of each submission

From Ambry Genetics, SCV002685964.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

The p.G304S variant (also known as c.910G>A), located in coding exon 18 of the COL1A2 gene, results from a G to A substitution at nucleotide position 910. The glycine at codon 304 is replaced by serine, an amino acid with similar properties, and is located in the triple helical domain. The majority of pathogenic mutations identified to date in COL1A2 have involved the substitution of another amino acid for glycine within the triple-helical domain (Dagleish R. Nucleic Acids Res. 1997 Jan 1;25(1):181-7; Marini JC et al. Hum Mutat. 2007 Mar;28(3):209-21; Bardai G et al. Osteoporos Int 2016 Dec;27(12):3607-3613). This particular glycine substitution has been detected in a cohort of patients with reported well-defined clinical diagnoses of osteogenisis imperfecta (OI), where this variant was indicated as associated with feaures of OI type I as well as possible overlapping features of Ehlers-Danlos syndrome; however, clinical details were limited (Maioli M et al. Eur J Hum Genet, 2019 07;27:1090-1100). In another study, this variant was detected in an additional proband who was also reported to have features of OI type I (Kaux JF et al. Rev Med Liege. 2009 Jan;64(1):11-5). Internal structural analysis indicates that this alteration disrupts the characteristic G-X-Y motif in the COL1A2 protein and inserts a bulky side chain into a sterically-constrained region (Bella J et al. Science. 1994;266:75-81; Hohenester E et al. Proc. Natl. Acad. Sci. U.S.A. 2008;105:18273-7; Ambry internal data). This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Based on the majority of available evidence to date, this variant is likely to be pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 2, 2024