U.S. flag

An official website of the United States government

NM_000169.3(GLA):c.337T>C (p.Phe113Leu) AND Cardiovascular phenotype

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 16, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002453751.3

Allele description [Variation Report for NM_000169.3(GLA):c.337T>C (p.Phe113Leu)]

NM_000169.3(GLA):c.337T>C (p.Phe113Leu)

Genes:
RPL36A-HNRNPH2:RPL36A-HNRNPH2 readthrough [Gene - HGNC]
GLA:galactosidase alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq22.1
Genomic location:
Preferred name:
NM_000169.3(GLA):c.337T>C (p.Phe113Leu)
HGVS:
  • NC_000023.11:g.101403843A>G
  • NG_007119.1:g.9121T>C
  • NG_016327.1:g.641A>G
  • NM_000169.3:c.337T>CMANE SELECT
  • NM_001199973.2:c.301-8093A>G
  • NM_001199974.2:c.178-8093A>G
  • NP_000160.1:p.Phe113Leu
  • NP_000160.1:p.Phe113Leu
  • LRG_672t1:c.337T>C
  • LRG_672:g.9121T>C
  • LRG_672p1:p.Phe113Leu
  • NC_000023.10:g.100658831A>G
  • NM_000169.2:c.337T>C
  • NR_164783.1:n.359T>C
  • p.F113L
  • p.Phe113Ile
Protein change:
F113L; PHE113LEU
Links:
OMIM: 300644.0063; dbSNP: rs869312142
NCBI 1000 Genomes Browser:
rs869312142
Molecular consequence:
  • NM_001199973.2:c.301-8093A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001199974.2:c.178-8093A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000169.3:c.337T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NR_164783.1:n.359T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Functional consequence:
effect on protein activity [Variation Ontology: 0053]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002614534Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Pathogenic
(Jan 16, 2020)
germlineclinical testing

PubMed (10)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

High incidence of later-onset fabry disease revealed by newborn screening.

Spada M, Pagliardini S, Yasuda M, Tukel T, Thiagarajan G, Sakuraba H, Ponzone A, Desnick RJ.

Am J Hum Genet. 2006 Jul;79(1):31-40. Epub 2006 Apr 28.

PubMed [citation]
PMID:
16773563
PMCID:
PMC1474133

Mutant alpha-galactosidase A enzymes identified in Fabry disease patients with residual enzyme activity: biochemical characterization and restoration of normal intracellular processing by 1-deoxygalactonojirimycin.

Ishii S, Chang HH, Kawasaki K, Yasuda K, Wu HL, Garman SC, Fan JQ.

Biochem J. 2007 Sep 1;406(2):285-95.

PubMed [citation]
PMID:
17555407
PMCID:
PMC1948963
See all PubMed Citations (10)

Details of each submission

From Ambry Genetics, SCV002614534.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (10)

Description

The p.F113L pathogenic mutation (also known as c.337T>C), located in coding exon 2 of the GLA gene, results from a T to C substitution at nucleotide position 337. The phenylalanine at codon 113 is replaced by leucine, an amino acid with highly similar properties. This mutation was detected in an adult male with residual alpha-galactosidase A enzyme activity and reported cardiac-variant Fabry disease whose carrier mother also had cardiac manifestations (Eng CM et al. Mol. Med., 1997 Mar;3:174-82). Subsequently, this mutation has been reported as a Portuguese founder mutation, having been detected in multiple individuals and families with Fabry disease, frequently presenting with late-onset cardiac-variant phenotoype; however, additional features of Fabry disease in individuals with this mutation have also been reported (Spada M et al. Am. J. Hum. Genet., 2006 Jul;79:31-40; Park JY et al. Exp. Mol. Med., 2009 Jan;41:1-7; Nowak A et al. Mol. Genet. Metab., 2018 02;123:148-153; Azevedo O et al. Mol. Genet. Metab., 2019 Jul; Oliveira JP et al. Eur J Med Genet, 2019 Jun;103703). In addition, several functional assays have shown this mutation to result in reduced enzyme activity in vitro (Spada M et al. Am. J. Hum. Genet., 2006 Jul;79:31-40; Wu X et al. Hum. Mutat., 2011 Aug;32:965-77; Ishii S et al. Biochem. J., 2007 Sep;406:285-95; Park JY et al. Exp. Mol. Med., 2009 Jan;41:1-7). Based on the supporting evidence, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 12, 2024