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NM_006245.4(PPP2R5D):c.1762C>T (p.His588Tyr) AND Neurodevelopmental delay

Germline classification:
not provided (1 submission)
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002508957.1

Allele description [Variation Report for NM_006245.4(PPP2R5D):c.1762C>T (p.His588Tyr)]

NM_006245.4(PPP2R5D):c.1762C>T (p.His588Tyr)

Genes:
MEA1:male-enhanced antigen 1 [Gene - OMIM - HGNC]
PPP2R5D:protein phosphatase 2 regulatory subunit B'delta [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.1
Genomic location:
Preferred name:
NM_006245.4(PPP2R5D):c.1762C>T (p.His588Tyr)
HGVS:
  • NC_000006.12:g.43011239C>T
  • NG_050636.1:g.31741C>T
  • NM_001270476.2:c.1309C>T
  • NM_006245.4:c.1762C>TMANE SELECT
  • NM_014623.4:c.*1231G>AMANE SELECT
  • NM_180976.3:c.1666C>T
  • NM_180977.3:c.1444C>T
  • NP_001257405.1:p.His437Tyr
  • NP_006236.1:p.His588Tyr
  • NP_851307.1:p.His556Tyr
  • NP_851308.1:p.His482Tyr
  • NC_000006.11:g.42978977C>T
  • NM_006245.3:c.1762C>T
Protein change:
H437Y
Links:
dbSNP: rs1363040405
NCBI 1000 Genomes Browser:
rs1363040405
Molecular consequence:
  • NM_014623.4:c.*1231G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001270476.2:c.1309C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006245.4:c.1762C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_180976.3:c.1666C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_180977.3:c.1444C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Neurodevelopmental delay
Identifiers:
MedGen: C4022738; Human Phenotype Ontology: HP:0012758

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002818413GenomeConnect, ClinGen
no classification provided
not providedunknownphenotyping only

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedphenotyping only

Details of each submission

From GenomeConnect, ClinGen, SCV002818413.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedphenotyping onlynot provided

Description

Variant classified as Uncertain significance and reported on 09-27-2021 by Lab or GTR ID 26957. GenomeConnect assertions are reported exactly as they appear on the patient-provided report from the testing laboratory. GenomeConnect staff make no attempt to reinterpret the clinical significance of the variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 1, 2024