NM_033118.4(MYLK2):c.487C>T (p.Leu163=) AND Hypertrophic cardiomyopathy 1

This record was updated by the submitter. Please see the current version.

Germline classification:: Likely benign (1 submission)
Last evaluated:: Oct 25, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002632627.2

Allele description

NM_033118.4(MYLK2):c.487C>T (p.Leu163=)

Gene:

MYLK2:myosin light chain kinase 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

20q11.21

Genomic location:

Preferred name:

NM_033118.4(MYLK2):c.487C>T (p.Leu163=)

HGVS:

NC_000020.11:g.31821452C>T
NG_012847.1:g.7078C>T
NM_033118.4:c.487C>TMANE SELECT
NP_149109.1:p.Leu163=
NP_149109.1:p.Leu163=
LRG_392t1:c.487C>T
LRG_392:g.7078C>T
LRG_392p1:p.Leu163=
NC_000020.10:g.30409255C>T
NM_033118.3:c.487C>T

Molecular consequence:

NM_033118.4:c.487C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Hypertrophic cardiomyopathy 1
Synonyms:: Familial hypertrophic cardiomyopathy 1; MYH7-Related Familial Hypertrophic Cardiomyopathy
Identifiers:: MONDO: MONDO:0008647; MedGen: C3495498; OMIM: 192600

Recent activity

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SH3 and cysteine-rich domain-containing protein 2 isoform X3 [Homo sapiens]
SH3 and cysteine-rich domain-containing protein 2 isoform X3 [Homo sapiens]
gi|2462554911|ref|XP_054171919.1|

Protein
BX108458 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGp998J154261; IMAGE:1678574...
BX108458 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGp998J154261; IMAGE:1678574 5', mRNA sequence
gi|27847880|gnl|dbEST|16753748|emb| 458.1|

Nucleotide
PREDICTED: Thalassophryne amazonica GA binding protein transcription factor subu...
PREDICTED: Thalassophryne amazonica GA binding protein transcription factor subunit alpha (gabpa), transcript variant X1, mRNA
gi|1839484912|ref|XM_034187289.1|

Nucleotide
Homo sapiens SH3 and cysteine rich domain 2 (STAC2), transcript variant 1, mRNA
Homo sapiens SH3 and cysteine rich domain 2 (STAC2), transcript variant 1, mRNA
gi|1519243984|ref|NM_198993.5|

Nucleotide
Bone Marrow Diseases
Bone Marrow Diseases
Diseases involving the BONE MARROW.<br/>

MeSH

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003503833	Invitae	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Oct 25, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003503833

Invitae

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Oct 25, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Invitae, SCV003503833.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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