NM_020719.3(PRR12):c.1420A>G (p.Ser474Gly) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 26, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002782791.2

Allele description [Variation Report for NM_020719.3(PRR12):c.1420A>G (p.Ser474Gly)]

NM_020719.3(PRR12):c.1420A>G (p.Ser474Gly)

Gene:

PRR12:proline rich 12 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19q13.33

Genomic location:

Preferred name:

NM_020719.3(PRR12):c.1420A>G (p.Ser474Gly)

HGVS:

NC_000019.10:g.49595755A>G
NG_051202.1:g.9579A>G
NM_020719.3:c.1420A>GMANE SELECT
NP_065770.1:p.Ser474Gly
NC_000019.9:g.50099012A>G
NM_020719.1:c.1420A>G

Protein change:

S474G

Molecular consequence:

NM_020719.3:c.1420A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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PREDICTED: Homo sapiens uncharacterized lncRNA (LOC105378632), ncRNA
PREDICTED: Homo sapiens uncharacterized lncRNA (LOC105378632), ncRNA
gi|2217273326|ref|XR_947161.3|

Nucleotide
Mus musculus makorin, ring finger protein, 1 (Mkrn1), transcript variant 1, mRNA
Mus musculus makorin, ring finger protein, 1 (Mkrn1), transcript variant 1, mRNA
gi|2288874467|ref|NM_018810.3|

Nucleotide
RecName: Full=Pecanex-like protein 3; AltName: Full=Pecanex homolog protein 3
RecName: Full=Pecanex-like protein 3; AltName: Full=Pecanex homolog protein 3
gi|187608854|sp|Q8VI59.2|PCX3_MOUSE

Protein
PREDICTED: Mus musculus predicted gene, 54080 (Gm54080), transcript variant X3, ...
PREDICTED: Mus musculus predicted gene, 54080 (Gm54080), transcript variant X3, ncRNA
gi|1907207112|ref|XR_004940438.1|

Nucleotide
RecName: Full=Immunoglobulin heavy variable 3-49; Flags: Precursor
RecName: Full=Immunoglobulin heavy variable 3-49; Flags: Precursor
gi|1109545978|sp|A0A0A0MS15.1|HV349 N

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003592320	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 26, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003592320

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 26, 2021)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003592320.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1420A>G (p.S474G) alteration is located in exon 4 (coding exon 4) of the PRR12 gene. This alteration results from a A to G substitution at nucleotide position 1420, causing the serine (S) at amino acid position 474 to be replaced by a glycine (G). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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