NM_019594.4(LRRC8A):c.211G>A (p.Gly71Ser) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jan 26, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003092590.3

Allele description [Variation Report for NM_019594.4(LRRC8A):c.211G>A (p.Gly71Ser)]

NM_019594.4(LRRC8A):c.211G>A (p.Gly71Ser)

Gene:

LRRC8A:leucine rich repeat containing 8 VRAC subunit A [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q34.11

Genomic location:

Preferred name:

NM_019594.4(LRRC8A):c.211G>A (p.Gly71Ser)

HGVS:

NC_000009.12:g.128907375G>A
NG_009630.1:g.30264G>A
NM_001127244.1:c.211G>A
NM_001127244.2:c.211G>A
NM_001127245.2:c.211G>A
NM_019594.4:c.211G>AMANE SELECT
NP_001120716.1:p.Gly71Ser
NP_001120717.1:p.Gly71Ser
NP_062540.2:p.Gly71Ser
NP_062540.2:p.Gly71Ser
LRG_80t1:c.211G>A
LRG_80:g.30264G>A
LRG_80p1:p.Gly71Ser
NC_000009.11:g.131669654G>A
NM_019594.3:c.211G>A

Protein change:

G71S

Molecular consequence:

NM_001127244.2:c.211G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001127245.2:c.211G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_019594.4:c.211G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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Microbe sample from Saccharospirillum alexandrii
Microbe sample from Saccharospirillum alexandrii

biosample
Caenorhabditis elegans Serpentine receptor class alpha-13 (sra-13), partial mRNA
Caenorhabditis elegans Serpentine receptor class alpha-13 (sra-13), partial mRNA
gi|71989902|ref|NM_001027015.1|

Nucleotide
Helix-loop-helix protein 30 [Caenorhabditis elegans]
Helix-loop-helix protein 30 [Caenorhabditis elegans]
gi|1972266471|ref|NP_001379927.1|

Protein
Caenorhabditis elegans Helix-loop-helix protein 30 (hlh-30), partial mRNA
Caenorhabditis elegans Helix-loop-helix protein 30 (hlh-30), partial mRNA
gi|1831512715|ref|NM_001364041.3|

Nucleotide
Preface - Disease-Modifying Antirheumatic Drugs (DMARDs) in Children With Juveni...
Preface - Disease-Modifying Antirheumatic Drugs (DMARDs) in Children With Juvenile Idiopathic Arthritis (JIA)

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003478387	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Jan 26, 2024)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003478387

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Jan 26, 2024)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003478387.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This sequence change replaces glycine, which is neutral and non-polar, with serine, which is neutral and polar, at codon 71 of the LRRC8A protein (p.Gly71Ser). This variant is present in population databases (rs144778925, gnomAD 0.03%). This variant has not been reported in the literature in individuals affected with LRRC8A-related conditions. ClinVar contains an entry for this variant (Variation ID: 2163944). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Not Available"; PolyPhen-2: "Benign"; Align-GVGD: "Not Available". The serine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

ClinVar

Relating variation to medicine