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NM_004606.5(TAF1):c.1943_1947+1del AND See cases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 4, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003128470.1

Allele description [Variation Report for NM_004606.5(TAF1):c.1943_1947+1del]

NM_004606.5(TAF1):c.1943_1947+1del

Gene:
TAF1:TATA-box binding protein associated factor 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_004606.5(TAF1):c.1943_1947+1del
HGVS:
  • NC_000023.11:g.71383160_71383165del
  • NG_012771.2:g.21897_21902del
  • NM_001286074.2:c.1943_1947+1del
  • NM_004606.5:c.1943_1947+1delMANE SELECT
  • NM_138923.4:c.1880_1884+1del
  • NC_000023.10:g.70603010_70603015del
Molecular consequence:
  • NM_001286074.2:c.1943_1947+1del - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_004606.5:c.1943_1947+1del - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_138923.4:c.1880_1884+1del - splice donor variant - [Sequence Ontology: SO:0001575]
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003804799Institute of Human Genetics, University Hospital Muenster
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Dec 4, 2021)
de novoclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Institute of Human Genetics, University Hospital Muenster, SCV003804799.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

ACMG categories: PVS1,PS2,PM2,PP4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providedbloodnot provided1not providednot providednot provided

Last Updated: Mar 4, 2023