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NM_017565.4(FAM20A):c.1511C>T (p.Thr504Ile) AND not specified

Germline classification:
Benign (1 submission)
Last evaluated:
Nov 3, 2022
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003151051.9

Allele description [Variation Report for NM_017565.4(FAM20A):c.1511C>T (p.Thr504Ile)]

NM_017565.4(FAM20A):c.1511C>T (p.Thr504Ile)

Genes:
FAM20A:FAM20A golgi associated secretory pathway pseudokinase [Gene - OMIM - HGNC]
PRKAR1A:protein kinase cAMP-dependent type I regulatory subunit alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q24.2
Genomic location:
Preferred name:
NM_017565.4(FAM20A):c.1511C>T (p.Thr504Ile)
HGVS:
  • NC_000017.11:g.68537592G>A
  • NG_007093.3:g.128970G>A
  • NG_029809.1:g.68363C>T
  • NM_001243746.2:c.1097C>T
  • NM_001276290.1:c.973+7591G>A
  • NM_017565.4:c.1511C>TMANE SELECT
  • NP_001230675.1:p.Thr366Ile
  • NP_060035.2:p.Thr504Ile
  • LRG_514:g.128970G>A
  • NC_000017.10:g.66533733G>A
  • NM_017565.3:c.1511C>T
  • NR_027751.2:n.1226C>T
Protein change:
T366I
Links:
dbSNP: rs146689929
NCBI 1000 Genomes Browser:
rs146689929
Molecular consequence:
  • NM_001276290.1:c.973+7591G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001243746.2:c.1097C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_017565.4:c.1511C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_027751.2:n.1226C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003839497Genetic Services Laboratory, University of Chicago
no assertion criteria provided
Benign
(Nov 3, 2022)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenonot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV003839497.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenonot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 26, 2024