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NM_000334.4(SCN4A):c.673C>T (p.Arg225Trp) AND Congenital myopathy 22A, classic

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 14, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003227995.5

Allele description [Variation Report for NM_000334.4(SCN4A):c.673C>T (p.Arg225Trp)]

NM_000334.4(SCN4A):c.673C>T (p.Arg225Trp)

Gene:
SCN4A:sodium voltage-gated channel alpha subunit 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q23.3
Genomic location:
Preferred name:
NM_000334.4(SCN4A):c.673C>T (p.Arg225Trp)
HGVS:
  • NC_000017.11:g.63971192G>A
  • NG_011699.1:g.6727C>T
  • NM_000334.4:c.673C>TMANE SELECT
  • NP_000325.4:p.Arg225Trp
  • NC_000017.10:g.62048552G>A
Protein change:
R225W; ARG225TRP
Links:
OMIM: 603967.0034; dbSNP: rs764718003
NCBI 1000 Genomes Browser:
rs764718003
Molecular consequence:
  • NM_000334.4:c.673C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Congenital myopathy 22A, classic (CMYP22A)
Identifiers:
MONDO: MONDO:0957247; MedGen: C5830453; OMIM: 620351

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003924061OMIM
no assertion criteria provided
Pathogenic
(Dec 14, 2023)
germlineliterature only

Zaharieva, I. T., Thor, M. G., Oates, E. C., van Karnebeek, C., Hendson, G., Blom, E., Witting, N., Rasmussen, M., Gabbett, M. T., Ravenscroft, G., Sframeli, M., Suetterlin, K., and 28 others Loss-of-function mutations in SCN4A cause severe foetal hypokinesia or 'classical' congenital myopathy. Brain 139: 674-691, 2016.

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Details of each submission

From OMIM, SCV003924061.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature onlynot provided

Description

In a 35-year-old Caucasian woman, born of unrelated parents (family 2), with classic congenital myopathy-22A (CMYP22A; 620351), Zaharieva et al. (2016) identified compound heterozygous mutations in the SCN4A gene: a c.673C-T transition, resulting in an arg225-to-trp (R225W) substitution, and a c.3628G-T transversion, resulting in a cys1209-to-phe (C1209F; 603967.0035) substitution. The mutations, which were found by exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. Neither variant was present in the ExAC database. Electrophysiologic studies in HEK293 cells transfected with the mutations showed that R225W was a hypomorphic allele causing reduced current amplitude, whereas C1209F resulted in a complete loss of channel function. The patient showed moderate hypotonia at birth requiring early respiratory support, delayed motor milestones, and proximal muscle weakness, but she did not have limb contractures and was ambulatory with a slow waddling gait. Her motor skills improved during childhood, but began to deteriorate around age 30. Her carrier parents were clinically unaffected.

Zaharieva et al. (2016) noted that Lee et al. (2009) had identified a heterozygous R225W mutation in a 21-year-old Korean man (patient 3) with mild nonpainful paramyotonia congenita (PMC; 168300). R225W is located at the cytoplasmic side of transmembrane S3 segment of domain I.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 12, 2024