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NM_015080.4(NRXN2):c.5038_5039del (p.Ser1680fs) AND multiple conditions

Germline classification:
not provided (1 submission)
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003233295.2

Allele description [Variation Report for NM_015080.4(NRXN2):c.5038_5039del (p.Ser1680fs)]

NM_015080.4(NRXN2):c.5038_5039del (p.Ser1680fs)

Gene:
NRXN2:neurexin 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
11q13.1
Genomic location:
Preferred name:
NM_015080.4(NRXN2):c.5038_5039del (p.Ser1680fs)
HGVS:
  • NC_000011.10:g.64607297_64607298del
  • NG_047107.1:g.120892_120893del
  • NM_001376262.1:c.4456_4457del
  • NM_001376263.1:c.4435_4436del
  • NM_001376265.1:c.4411_4412del
  • NM_001376266.1:c.4432_4433del
  • NM_001376267.1:c.4345_4346del
  • NM_001400681.1:c.1081_1082del
  • NM_001400682.1:c.991_992del
  • NM_015080.4:c.5038_5039delMANE SELECT
  • NM_138732.3:c.4828_4829del
  • NM_138734.3:c.1900_1901del
  • NP_001363191.1:p.Ser1486fs
  • NP_001363192.1:p.Ser1479fs
  • NP_001363194.1:p.Ser1471fs
  • NP_001363195.1:p.Ser1478fs
  • NP_001363196.1:p.Ser1449fs
  • NP_001387610.1:p.Ser361fs
  • NP_001387611.1:p.Ser331fs
  • NP_055895.1:p.Ser1680fs
  • NP_620060.1:p.Ser1610fs
  • NP_620063.1:p.Ser634fs
  • NC_000011.9:g.64374769_64374770del
  • NM_138732.3:c.4828_4829delTC
Protein change:
S1449fs
Molecular consequence:
  • NM_001376262.1:c.4456_4457del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001376263.1:c.4435_4436del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001376265.1:c.4411_4412del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001376266.1:c.4432_4433del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001376267.1:c.4345_4346del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001400681.1:c.1081_1082del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001400682.1:c.991_992del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_015080.4:c.5038_5039del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_138732.3:c.4828_4829del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_138734.3:c.1900_1901del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Schizophrenia (SCZD)
Identifiers:
MONDO: MONDO:0005090; MeSH: D012559; MedGen: C0036341; OMIM: 181500; Human Phenotype Ontology: HP:0100753
Name:
Autism spectrum disorder
Synonyms:
Autism spectrum disorders
Identifiers:
MONDO: MONDO:0005258; MeSH: D000067877; MedGen: C1510586

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003931263GenomeConnect - Brain Gene Registry
no classification provided
not providedde novophenotyping only

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes1not providednot provided1not providedphenotyping only

Details of each submission

From GenomeConnect - Brain Gene Registry, SCV003931263.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedphenotyping onlynot provided

Description

Variant classified as Likely pathogenic and reported on 02-17-2017 by Baylor Medical Genetics Laboratories. Assertions are reported exactly as they appear on the patient provided laboratory report. GenomeConnect does not attempt to reinterpret the variant. The IDDRC-CTSA National Brain Gene Registry (BGR) is a study funded by the U.S. National Center for Advancing Translational Sciences (NCATS) and includes 13 Intellectual and Developmental Disability Research Center (IDDRC) institutions. The study is led by Principal Investigator Dr. Philip Payne from Washington University. The BGR is a data commons of gene variants paired with subject clinical information. This database helps scientists learn more about genetic changes and their impact on the brain and behavior. Participation in the Brain Gene Registry requires participation in GenomeConnect. More information about the Brain Gene Registry can be found on the study website - https://braingeneregistry.wustl.edu/.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyes1not providednot provided1not providednot providednot provided

Last Updated: Jun 23, 2024