NM_018112.3(TMEM38B):c.505T>C (p.Trp169Arg) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jul 14, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003371125.2

Allele description [Variation Report for NM_018112.3(TMEM38B):c.505T>C (p.Trp169Arg)]

NM_018112.3(TMEM38B):c.505T>C (p.Trp169Arg)

Gene:

TMEM38B:transmembrane protein 38B [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q31.2

Genomic location:

Preferred name:

NM_018112.3(TMEM38B):c.505T>C (p.Trp169Arg)

HGVS:

NC_000009.12:g.105722584T>C
NG_032971.1:g.33060T>C
NM_018112.3:c.505T>CMANE SELECT
NP_060582.1:p.Trp169Arg
NC_000009.11:g.108484865T>C
NM_018112.1:c.505T>C

Protein change:

W169R

Molecular consequence:

NM_018112.3:c.505T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

Recent activity

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PREDICTED: Homo sapiens fukutin (FKTN), transcript variant X14, mRNA
PREDICTED: Homo sapiens fukutin (FKTN), transcript variant X14, mRNA
gi|2462623399|ref|XM_054362343.1|

Nucleotide
Fungal sp. FCAS35 18S small subunit ribosomal RNA gene, partial sequence
Fungal sp. FCAS35 18S small subunit ribosomal RNA gene, partial sequence
gi|239759745|gb|GQ120178.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004086184	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jul 14, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004086184

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jul 14, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004086184.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.505T>C (p.W169R) alteration is located in exon 4 (coding exon 4) of the TMEM38B gene. This alteration results from a T to C substitution at nucleotide position 505, causing the tryptophan (W) at amino acid position 169 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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