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NM_003506.4(FZD6):c.1900G>A (p.Asp634Asn) AND Inborn genetic diseases

Germline classification:
Likely benign (1 submission)
Last evaluated:
Aug 22, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003374322.2

Allele description [Variation Report for NM_003506.4(FZD6):c.1900G>A (p.Asp634Asn)]

NM_003506.4(FZD6):c.1900G>A (p.Asp634Asn)

Gene:
FZD6:frizzled class receptor 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q22.3
Genomic location:
Preferred name:
NM_003506.4(FZD6):c.1900G>A (p.Asp634Asn)
HGVS:
  • NC_000008.11:g.103330013G>A
  • NG_028909.2:g.34020G>A
  • NM_001164615.2:c.1900G>A
  • NM_001164616.2:c.1804G>A
  • NM_001317796.2:c.985G>A
  • NM_003506.4:c.1900G>AMANE SELECT
  • NP_001158087.1:p.Asp634Asn
  • NP_001158088.1:p.Asp602Asn
  • NP_001304725.1:p.Asp329Asn
  • NP_003497.2:p.Asp634Asn
  • NC_000008.10:g.104342241G>A
  • NM_003506.3:c.1900G>A
  • NR_133921.2:n.2068G>A
Protein change:
D329N
Molecular consequence:
  • NM_001164615.2:c.1900G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001164616.2:c.1804G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317796.2:c.985G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003506.4:c.1900G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_133921.2:n.2068G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004081843Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Aug 22, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004081843.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024