NM_032590.5(KDM2B):c.798A>G (p.Pro266=) AND not provided

This record was updated by the submitter. Please see the current version.

Germline classification:: Likely benign (1 submission)
Last evaluated:: Nov 1, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003392095.9

Allele description

NM_032590.5(KDM2B):c.798A>G (p.Pro266=)

Gene:

KDM2B:lysine demethylase 2B [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12q24.31

Genomic location:

Preferred name:

NM_032590.5(KDM2B):c.798A>G (p.Pro266=)

HGVS:

NC_000012.12:g.121532939T>C
NG_033820.1:g.53077A>G
NG_033820.2:g.54340A>G
NM_001005366.2:c.705A>G
NM_032590.5:c.798A>GMANE SELECT
NP_001005366.1:p.Pro235=
NP_115979.3:p.Pro266=
NC_000012.11:g.121970844T>C

Molecular consequence:

NM_001005366.2:c.705A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_032590.5:c.798A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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Streptococcus suis strain 2017UMN1435.22, whole genome shotgun sequencing projec...
Streptococcus suis strain 2017UMN1435.22, whole genome shotgun sequencing project
gi|1697740115|gb|VIEI00000000.1|VIE 0000

Nucleotide
lysozyme-like protein 2 precursor [Homo sapiens]
lysozyme-like protein 2 precursor [Homo sapiens]
gi|1434520748|ref|NP_898881.3|

Protein
runt-related transcription factor 1 isoform X3 [Homo sapiens]
runt-related transcription factor 1 isoform X3 [Homo sapiens]
gi|2462583362|ref|XP_054180873.1|

Protein
Microbe sample from Penicillium crustosum
Microbe sample from Penicillium crustosum

biosample
Homo sapiens very low density lipoprotein receptor, mRNA (cDNA clone MGC:168175 ...
Homo sapiens very low density lipoprotein receptor, mRNA (cDNA clone MGC:168175 IMAGE:9020552), complete cds
gi|187950382|gb|BC136562.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004132126	CeGaT Center for Human Genetics Tuebingen	criteria provided, single submitter (CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)	Likely benign (Nov 1, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004132126

CeGaT Center for Human Genetics Tuebingen

criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)

Likely benign
(Nov 1, 2022)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	1	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV004132126.9

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	not provided

Description

KDM2B: BP4, BP7

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Oct 8, 2024

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