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NM_001160305.4(SETD6):c.481G>A (p.Glu161Lys) AND not provided

Germline classification:
Likely benign (1 submission)
Last evaluated:
May 1, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003419345.6

Allele description

NM_001160305.4(SETD6):c.481G>A (p.Glu161Lys)

Genes:
LOC130059146:ATAC-STARR-seq lymphoblastoid active region 10930 [Gene]
SETD6:SET domain containing 6, protein lysine methyltransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q21
Genomic location:
Preferred name:
NM_001160305.4(SETD6):c.481G>A (p.Glu161Lys)
HGVS:
  • NC_000016.10:g.58516482G>A
  • NG_193567.1:g.181G>A
  • NM_001160305.4:c.481G>AMANE SELECT
  • NM_024860.3:c.409G>A
  • NP_001153777.1:p.Glu161Lys
  • NP_079136.2:p.Glu137Lys
  • NC_000016.9:g.58550386G>A
  • NR_134583.1:n.468G>A
Protein change:
E137K
Molecular consequence:
  • NM_001160305.4:c.481G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024860.3:c.409G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_134583.1:n.468G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004139890CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(May 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV004139890.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided

Description

SETD6: BP4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

Last Updated: Jun 17, 2024