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NC_012920.1:m.1555A>G AND Hearing loss, sensorineural, autosomal-mitochondrial type

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 24, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003445067.1

Allele description [Variation Report for NC_012920.1:m.1555A>G]

NC_012920.1:m.1555A>G

Genes:
MT-ND1:mitochondrially encoded NADH dehydrogenase 1 [Gene - OMIM - HGNC]
MT-RNR1:mitochondrially encoded 12S RNA [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Genomic location:
Preferred name:
NC_012920.1:m.1555A>G
Other names:
A1555G
HGVS:
  • NC_012920.1:m.1555A>G
  • m.1555A>G
Nucleotide change:
1555A-G
Links:
Genetic Testing Registry (GTR): GTR000322828; Genetic Testing Registry (GTR): GTR000334707; Genetic Testing Registry (GTR): GTR000500593; Medical Genetics Summaries: m.1555A>G; PharmGKB: 1444608367; PharmGKB: 1444608367PA164744372; PharmGKB: 1444608367PA449753; PharmGKB: 1444608367PA450137; PharmGKB: 1444608367PA450608; PharmGKB: 1444608367PA451512; PharmGKB: 1444608367PA451704; PharmGKB: 1444608367PA452167; OMIM: 561000.0001; dbSNP: rs267606617
NCBI 1000 Genomes Browser:
rs267606617
Observations:
1

Condition(s)

Name:
Hearing loss, sensorineural, autosomal-mitochondrial type
Synonyms:
Deafness, sensorineural, autosomal-mitochondrial type
Identifiers:
MONDO: MONDO:0009090; MedGen: C1857332; Orphanet: 90641; OMIM: 221745

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004174183Diagnostics Centre, Carl Von Ossietzky University Oldenburg
no assertion criteria provided
Likely pathogenic
(Oct 24, 2023)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Analysis of mitochondrial A1555G mutation in infants with hearing impairment.

Wu L, Li R, Chen J, Chen Y, Yang M, Wu Q.

Exp Ther Med. 2018 Jun;15(6):5307-5313. doi: 10.3892/etm.2018.6078. Epub 2018 Apr 18.

PubMed [citation]
PMID:
29805548
PMCID:
PMC5958681

Mitochondrial mutations associated with aminoglycoside ototoxicity and hearing loss susceptibility identified by meta-analysis.

Jing W, Zongjie H, Denggang F, Na H, Bin Z, Aifen Z, Xijiang H, Cong Y, Yunping D, Ring HZ, Ring BZ.

J Med Genet. 2015 Feb;52(2):95-103. doi: 10.1136/jmedgenet-2014-102753. Epub 2014 Dec 16.

PubMed [citation]
PMID:
25515069
See all PubMed Citations (5)

Details of each submission

From Diagnostics Centre, Carl Von Ossietzky University Oldenburg, SCV004174183.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (5)

Description

The variant MT-RNR1:n.908A>G, m.1555A>G is located in the 12S rRNA gene (MT-RNR1) and results from an adenine to guanine at nucleotide position 1555. It has been described in numerous cases with mitochondrial non-syndromic hearing loss (PMID: 7689389, 1613771, 8285309, 8414970, 9111378, 9040738, 9490575, 9831149, 10661905, 12031626, 12920080, 16935512, 20123042, 22317974, 23357420, 24252789, 11870684). Although the variant is present at homoplasmy in unaffected individuals, multiple individuals harboring the variant were reported to have hearing loss after amynoglycoside exposure. Non amynoglycoside exposure-related loss hering have been also reported. Age of onset of hearing loss ranged from infancy (after aminoglycoside exposure) to adulthood. Overall, aminoglycoside-based antibiotic treatments are known to increase the risk of hearing loss in carriers of this alteration (PMID: 29805548, 25515069). Multiple studies provide experimental evidences supporting a deleterious functional effect of the variant (PMID: 11230176, 8817331, 8687424). The variant is not considered rare in the overall population (MAF 0.1% for homoplasmy in gnomAD V3.1). The ClinGen Mitochondrial Disease Nuclear and Mitochondrial Variant Curation Expert Panel suggest to classify of Pathogenic (Clinvar: 9628). Based on available evidence, the variant is classified as Likely Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Apr 20, 2024