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NM_000313.4(PROS1):c.1501T>C (p.Ser501Pro) AND Hereditary thrombophilia due to congenital protein S deficiency

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 15, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003447474.1

Allele description [Variation Report for NM_000313.4(PROS1):c.1501T>C (p.Ser501Pro)]

NM_000313.4(PROS1):c.1501T>C (p.Ser501Pro)

Gene:
PROS1:protein S [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q11.1
Genomic location:
Preferred name:
NM_000313.4(PROS1):c.1501T>C (p.Ser501Pro)
Other names:
S460P
HGVS:
  • NC_000003.12:g.93879306A>G
  • NG_009813.1:g.99785T>C
  • NM_000313.4:c.1501T>CMANE SELECT
  • NM_001314077.2:c.1597T>C
  • NP_000304.2:p.Ser501Pro
  • NP_000304.2:p.Ser501Pro
  • NP_001301006.1:p.Ser533Pro
  • LRG_572t1:c.1501T>C
  • LRG_572:g.99785T>C
  • LRG_572p1:p.Ser501Pro
  • NC_000003.11:g.93598150A>G
  • NM_000313.3:c.1501T>C
  • P07225:p.Ser501Pro
Protein change:
S501P; SER460PRO
Links:
UniProtKB: P07225#VAR_005568; OMIM: 176880.0001; dbSNP: rs121918472
NCBI 1000 Genomes Browser:
rs121918472
Molecular consequence:
  • NM_000313.4:c.1501T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001314077.2:c.1597T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary thrombophilia due to congenital protein S deficiency
Identifiers:
MONDO: MONDO:0019144; MedGen: C2584611

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004175577Genetics and Molecular Pathology, SA Pathology

See additional submitters

criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Sep 15, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Genetics and Molecular Pathology, SA Pathology, SCV004175577.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024