NM_001394372.1(BICRA):c.1214_1215insT (p.Gln407fs) AND Coffin-Siris syndrome 12

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Dec 12, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003596253.1

Allele description [Variation Report for NM_001394372.1(BICRA):c.1214_1215insT (p.Gln407fs)]

NM_001394372.1(BICRA):c.1214_1215insT (p.Gln407fs)

Gene:

BICRA:BRD4 interacting chromatin remodeling complex associated protein [Gene - OMIM - HGNC]

Variant type:

Insertion

Cytogenetic location:

19q13.33

Genomic location:

Preferred name:

NM_001394372.1(BICRA):c.1214_1215insT (p.Gln407fs)

HGVS:

NC_000019.10:g.47680384_47680385insT
NM_001394372.1:c.1214_1215insTMANE SELECT
NM_015711.3:c.1214_1215insT
NP_001381301.1:p.Gln407fs
NP_056526.3:p.Gln407fs
NC_000019.9:g.48183641_48183642insT

Protein change:

Q407fs

Molecular consequence:

NM_001394372.1:c.1214_1215insT - frameshift variant - [Sequence Ontology: SO:0001589]
NM_015711.3:c.1214_1215insT - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Coffin-Siris syndrome 12
Identifiers:: MONDO: MONDO:0025699; MedGen: C5444111; OMIM: 619325

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004244552	Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Dec 12, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004244552

Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Dec 12, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center, SCV004244552.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

PVS1, PM2, PM6

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 20, 2024

ClinVar

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