NM_018062.4(FANCL):c.822-12C>T AND Fanconi anemia

Germline classification:: Likely benign (1 submission)
Last evaluated:: May 2, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003637561.2

Allele description [Variation Report for NM_018062.4(FANCL):c.822-12C>T]

NM_018062.4(FANCL):c.822-12C>T

Gene:

FANCL:FA complementation group L [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p16.1

Genomic location:

Preferred name:

NM_018062.4(FANCL):c.822-12C>T

HGVS:

NC_000002.12:g.58162959G>A
NG_007418.1:g.83421C>T
NM_001114636.2:c.837-12C>T
NM_001374615.1:c.867-12C>T
NM_001410792.1:c.882-12C>T
NM_018062.4:c.822-12C>TMANE SELECT
LRG_501:g.83421C>T
NC_000002.11:g.58390094G>A

Molecular consequence:

NM_001114636.2:c.837-12C>T - intron variant - [Sequence Ontology: SO:0001627]
NM_001374615.1:c.867-12C>T - intron variant - [Sequence Ontology: SO:0001627]
NM_001410792.1:c.882-12C>T - intron variant - [Sequence Ontology: SO:0001627]
NM_018062.4:c.822-12C>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Fanconi anemia (FA)
Synonyms:: Fanconi pancytopenia; Fanconi's anemia
Identifiers:: MONDO: MONDO:0019391; MeSH: D005199; MedGen: C0015625; Orphanet: 84; OMIM: PS227650

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Estetrol
Estetrol
A metabolite of ESTRIOL with a 15-alpha-hydroxyl group. Estetrol can be converted from estriol sulfate or DEHYDROEPIANDROSTERONE SULFATE by the fetal-placental unit.... Year introduced: 1991(1975)

MeSH
Antacids
Antacids
Substances that counteract or neutralize acidity of the GASTROINTESTINAL TRACT. 

MeSH
Cytochrome P-450 Enzyme Inducers
Cytochrome P-450 Enzyme Inducers
Drugs and compounds that induce the synthesis of CYTOCHROME P-450 ENZYMES. Year introduced: 2015

MeSH
Galactogogues
Galactogogues
Substances that induce LACTATION. Year introduced: 2010

MeSH
Sequestering Agents
Sequestering Agents
Compounds that bind to and reduce the biological availability of a chemical or pharmaceutical agent. Year introduced: 2014

MeSH

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004554661	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (May 2, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004554661

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(May 2, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004554661.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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