NM_033028.5(BBS4):c.1248+18T>G AND Bardet-Biedl syndrome

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jun 2, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003849980.2

Allele description [Variation Report for NM_033028.5(BBS4):c.1248+18T>G]

NM_033028.5(BBS4):c.1248+18T>G

Gene:

BBS4:Bardet-Biedl syndrome 4 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

15q24.1

Genomic location:

Preferred name:

NM_033028.5(BBS4):c.1248+18T>G

HGVS:

NC_000015.10:g.72735984T>G
NG_009416.2:g.54800T>G
NG_009416.3:g.54779T>G
NM_001252678.2:c.732+18T>G
NM_001320665.2:c.1179+18T>G
NM_033028.5:c.1248+18T>GMANE SELECT
NC_000015.9:g.73028325T>G

Molecular consequence:

NM_001252678.2:c.732+18T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001320665.2:c.1179+18T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_033028.5:c.1248+18T>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Bardet-Biedl syndrome (BBS)
Identifiers:: MONDO: MONDO:0015229; MedGen: C0752166; Orphanet: 110; OMIM: PS209900

Recent activity

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cytochrome c oxidase subunit I, partial (mitochondrion) [Mugil curvidens]
cytochrome c oxidase subunit I, partial (mitochondrion) [Mugil curvidens]
gi|1812585201|gb|QID59224.1|

Protein
Lacticaseibacillus rhamnosus strain Lrh_yogurt_A2 NODE_3_length_443087_cov_30.89...
Lacticaseibacillus rhamnosus strain Lrh_yogurt_A2 NODE_3_length_443087_cov_30.899731, whole genome shotgun sequence
gi|2415488546|ref|NZ_JAPUDK01000000 gnl|WGS:NZ_JAPUDK01|NODE_3_length_443087_cov_30.899731

Nucleotide
Lacticaseibacillus rhamnosus strain CIRM-BIA 784 NODE_16_length_26860_cov_42.421...
Lacticaseibacillus rhamnosus strain CIRM-BIA 784 NODE_16_length_26860_cov_42.421890, whole genome shotgun sequence
gi|2303530784|ref|NZ_RINA01000016.1 |WGS:NZ_RINA01|NODE_16_length_26860_cov_42.421890

Nucleotide
Metagenome or environmental sample from metagenome
Metagenome or environmental sample from metagenome

biosample
arabidopsis_7h_sh_b
arabidopsis_7h_sh_b

biosample

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004652101	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Jun 2, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004652101

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Jun 2, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004652101.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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