NM_012239.6(SIRT3):c.235T>C (p.Phe79Leu) AND SIRT3-related disorder

Germline classification:: Likely benign (1 submission)
Last evaluated:: Nov 4, 2021
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003930498.2

Allele description [Variation Report for NM_012239.6(SIRT3):c.235T>C (p.Phe79Leu)]

NM_012239.6(SIRT3):c.235T>C (p.Phe79Leu)

Gene:

SIRT3:sirtuin 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

11p15.5

Genomic location:

Preferred name:

NM_012239.6(SIRT3):c.235T>C (p.Phe79Leu)

HGVS:

NC_000011.10:g.236094A>G
NM_001017524.3:c.-146+100T>C
NM_001370310.1:c.235T>C
NM_001370312.1:c.235T>C
NM_001370314.1:c.235T>C
NM_001370315.1:c.135+100T>C
NM_001370316.1:c.135+100T>C
NM_001370317.1:c.-10+522T>C
NM_001370318.1:c.-146+522T>C
NM_001370319.1:c.-146+595T>C
NM_001370320.1:c.-146+597T>C
NM_001370321.1:c.-146+522T>C
NM_001370322.1:c.-49+522T>C
NM_001370323.1:c.-146+100T>C
NM_001370324.1:c.-146+597T>C
NM_001370325.1:c.-146+100T>C
NM_012239.6:c.235T>CMANE SELECT
NP_001357239.1:p.Phe79Leu
NP_001357241.1:p.Phe79Leu
NP_001357243.1:p.Phe79Leu
NP_036371.1:p.Phe79Leu
NC_000011.9:g.236094A>G
NM_012239.5:c.235T>C
NR_163396.1:n.249T>C
NR_163399.1:n.249T>C
NR_163401.1:n.249T>C
NR_163402.1:n.249T>C

Protein change:

F79L

Links:

dbSNP: rs143632880

NCBI 1000 Genomes Browser:

rs143632880

Molecular consequence:

NM_001017524.3:c.-146+100T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370315.1:c.135+100T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370316.1:c.135+100T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370317.1:c.-10+522T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370318.1:c.-146+522T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370319.1:c.-146+595T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370320.1:c.-146+597T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370321.1:c.-146+522T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370322.1:c.-49+522T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370323.1:c.-146+100T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370324.1:c.-146+597T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370325.1:c.-146+100T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001370310.1:c.235T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001370312.1:c.235T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001370314.1:c.235T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_012239.6:c.235T>C - missense variant - [Sequence Ontology: SO:0001583]
NR_163396.1:n.249T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_163399.1:n.249T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_163401.1:n.249T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_163402.1:n.249T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: SIRT3-related disorder
Synonyms:: SIRT3-related condition
Identifiers:

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txid4838[Organism] (22097)
Protein
txid5498[Organism] (35308)
Protein
Chain A, Amino acid ABC superfamily ATP binding cassette transporter, binding pr...
Chain A, Amino acid ABC superfamily ATP binding cassette transporter, binding protein
gi|407944049|pdb|4H5F|A

Protein
Chain C, Glyoxylate reductase/hydroxypyruvate reductase
Chain C, Glyoxylate reductase/hydroxypyruvate reductase
gi|150261536|pdb|2Q50|C

Protein
Chain A, Uncharacterized protein At1g77540
Chain A, Uncharacterized protein At1g77540
gi|150261531|pdb|2Q4Y|A

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004737676	PreventionGenetics, part of Exact Sciences	no assertion criteria provided	Likely benign (Nov 4, 2021)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004737676

PreventionGenetics, part of Exact Sciences

no assertion criteria provided

Likely benign
(Nov 4, 2021)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004737676.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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