NM_016356.5(DCDC2):c.1099T>A (p.Ser367Thr) AND DCDC2-related disorder

Germline classification:: Likely benign (1 submission)
Last evaluated:: Dec 7, 2023
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003953741.2

Allele description [Variation Report for NM_016356.5(DCDC2):c.1099T>A (p.Ser367Thr)]

NM_016356.5(DCDC2):c.1099T>A (p.Ser367Thr)

Gene:

DCDC2:doublecortin domain containing 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

6p22.3

Genomic location:

Preferred name:

NM_016356.5(DCDC2):c.1099T>A (p.Ser367Thr)

HGVS:

NC_000006.12:g.24178557A>T
NG_012829.2:g.209736T>A
NM_001195610.2:c.1099T>A
NM_016356.5:c.1099T>AMANE SELECT
NP_001182539.1:p.Ser367Thr
NP_057440.2:p.Ser367Thr
NC_000006.11:g.24178785A>T
NM_016356.4:c.1099T>A

Protein change:

S367T

Links:

dbSNP: rs538198742

NCBI 1000 Genomes Browser:

rs538198742

Molecular consequence:

NM_001195610.2:c.1099T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_016356.5:c.1099T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: DCDC2-related disorder
Synonyms:: DCDC2-related condition
Identifiers:

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Serpentine Receptor, class D (Delta) [Caenorhabditis elegans]
Serpentine Receptor, class D (Delta) [Caenorhabditis elegans]
gi|1254006602|ref|NP_500839.2|

Protein
Caenorhabditis elegans Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mi...
Caenorhabditis elegans Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (sucl-1), mRNA
gi|1972311684|ref|NM_078049.7|

Nucleotide
Bacillus subtilis isolate NRS6134, whole genome shotgun sequencing project
Bacillus subtilis isolate NRS6134, whole genome shotgun sequencing project
gi|2036802608|emb|CAJNQJ000000000.1 QJ010000000

Nucleotide
GLT6D1 glycosyltransferase 6 domain containing 1 [Homo sapiens]
GLT6D1 glycosyltransferase 6 domain containing 1 [Homo sapiens]
Gene ID:360203

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004771270	PreventionGenetics, part of Exact Sciences	no assertion criteria provided	Likely benign (Dec 7, 2023)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004771270

PreventionGenetics, part of Exact Sciences

no assertion criteria provided

Likely benign
(Dec 7, 2023)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004771270.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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