U.S. flag

An official website of the United States government

GRCh37/hg19 21q22.3(chr21:44577746-48097372)x1 AND not specified

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003986159.1

Allele description [Variation Report for GRCh37/hg19 21q22.3(chr21:44577746-48097372)x1]

GRCh37/hg19 21q22.3(chr21:44577746-48097372)x1

Genes:
  • AGPAT3:1-acylglycerol-3-phosphate O-acyltransferase 3 [Gene - OMIM - HGNC]
  • DNMT3L:DNA methyltransferase 3 like [Gene - OMIM - HGNC]
  • PTTG1IP:PTTG1 interacting protein [Gene - OMIM - HGNC]
  • PWP2:PWP2 small subunit processome component [Gene - OMIM - HGNC]
  • S100B:S100 calcium binding protein B [Gene - OMIM - HGNC]
  • SLX9:SLX9 ribosome biogenesis factor [Gene - HGNC]
  • ADARB1:adenosine deaminase RNA specific B1 [Gene - OMIM - HGNC]
  • AIRE:autoimmune regulator [Gene - OMIM - HGNC]
  • C21orf58:chromosome 21 open reading frame 58 [Gene - HGNC]
  • CFAP410:cilia and flagella associated protein 410 [Gene - OMIM - HGNC]
  • COL6A1:collagen type VI alpha 1 chain [Gene - OMIM - HGNC]
  • COL6A2:collagen type VI alpha 2 chain [Gene - OMIM - HGNC]
  • COL18A1:collagen type XVIII alpha 1 chain [Gene - OMIM - HGNC]
  • CRYAA:crystallin alpha A [Gene - OMIM - HGNC]
  • CSTB:cystatin B [Gene - OMIM - HGNC]
  • DIP2A:disco interacting protein 2 homolog A [Gene - OMIM - HGNC]
  • FTCD:formimidoyltransferase cyclodeaminase [Gene - OMIM - HGNC]
  • GATD3:glutamine amidotransferase class 1 domain containing 3 [Gene - OMIM - HGNC]
  • HSF2BP:heat shock transcription factor 2 binding protein [Gene - OMIM - HGNC]
  • ICOSLG:inducible T cell costimulator ligand [Gene - OMIM - HGNC]
  • ITGB2:integrin subunit beta 2 [Gene - OMIM - HGNC]
  • KRTAP10-10:keratin associated protein 10-10 [Gene - HGNC]
  • KRTAP10-11:keratin associated protein 10-11 [Gene - HGNC]
  • KRTAP10-12:keratin associated protein 10-12 [Gene - HGNC]
  • KRTAP10-1:keratin associated protein 10-1 [Gene - HGNC]
  • KRTAP10-2:keratin associated protein 10-2 [Gene - HGNC]
  • KRTAP10-3:keratin associated protein 10-3 [Gene - HGNC]
  • KRTAP10-4:keratin associated protein 10-4 [Gene - HGNC]
  • KRTAP10-5:keratin associated protein 10-5 [Gene - HGNC]
  • KRTAP10-6:keratin associated protein 10-6 [Gene - HGNC]
  • KRTAP10-7:keratin associated protein 10-7 [Gene - HGNC]
  • KRTAP10-8:keratin associated protein 10-8 [Gene - HGNC]
  • KRTAP10-9:keratin associated protein 10-9 [Gene - HGNC]
  • KRTAP12-1:keratin associated protein 12-1 [Gene - HGNC]
  • KRTAP12-2:keratin associated protein 12-2 [Gene - HGNC]
  • KRTAP12-3:keratin associated protein 12-3 [Gene - HGNC]
  • KRTAP12-4:keratin associated protein 12-4 [Gene - HGNC]
  • LSS:lanosterol synthase [Gene - OMIM - HGNC]
  • LRRC3:leucine rich repeat containing 3 [Gene - OMIM - HGNC]
  • LINC00163:long intergenic non-protein coding RNA 163 [Gene - OMIM - HGNC]
  • LINC00315:long intergenic non-protein coding RNA 315 [Gene - HGNC]
  • LINC00334:long intergenic non-protein coding RNA 334 [Gene - HGNC]
  • MCM3AP:minichromosome maintenance complex component 3 associated protein [Gene - OMIM - HGNC]
  • PCNT:pericentrin [Gene - OMIM - HGNC]
  • PFKL:phosphofructokinase, liver type [Gene - OMIM - HGNC]
  • PCBP3:poly(rC) binding protein 3 [Gene - OMIM - HGNC]
  • POFUT2:protein O-fucosyltransferase 2 [Gene - OMIM - HGNC]
  • PRMT2:protein arginine methyltransferase 2 [Gene - OMIM - HGNC]
  • PDXK:pyridoxal kinase [Gene - OMIM - HGNC]
  • RRP1:ribosomal RNA processing 1 [Gene - OMIM - HGNC]
  • RRP1B:ribosomal RNA processing 1B [Gene - OMIM - HGNC]
  • SIK1:salt inducible kinase 1 [Gene - OMIM - HGNC]
  • SUMO3:small ubiquitin like modifier 3 [Gene - OMIM - HGNC]
  • SLC19A1:solute carrier family 19 member 1 [Gene - OMIM - HGNC]
  • SPATC1L:spermatogenesis and centriole associated 1 like [Gene - OMIM - HGNC]
  • TSPEAR:thrombospondin type laminin G domain and EAR repeats [Gene - OMIM - HGNC]
  • TRAPPC10:trafficking protein particle complex subunit 10 [Gene - OMIM - HGNC]
  • TRPM2:transient receptor potential cation channel subfamily M member 2 [Gene - OMIM - HGNC]
  • UBE2G2:ubiquitin conjugating enzyme E2 G2 [Gene - OMIM - HGNC]
  • YBEY:ybeY metalloendoribonuclease [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
21q22.3
Genomic location:
Chr21: 44577746 - 48097372 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 21q22.3(chr21:44577746-48097372)x1
HGVS:
    Observations:
    1

    Condition(s)

    Synonyms:
    AllHighlyPenetrant
    Identifiers:
    MedGen: CN169374

    Recent activity

    Your browsing activity is empty.

    Activity recording is turned off.

    Turn recording back on

    See more...

    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV004802288ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories
    criteria provided, single submitter

    (Constitutional Copy Number Variant Assertion Criteria)
    Pathogenicgermlineclinical testing

    Citation Link

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedgermlineunknown1not providednot providednot providednot providedclinical testing

    Details of each submission

    From ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, SCV004802288.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not provided1not providednot providedclinical testingnot provided
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1germlineunknownnot providednot providednot provided1not providednot providednot provided

    Last Updated: Mar 30, 2024