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NM_018713.3(SLC30A10):c.137C>A (p.Ser46Tyr) AND Hypermanganesemia with dystonia, polycythemia, and cirrhosis

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 29, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003989349.2

Allele description [Variation Report for NM_018713.3(SLC30A10):c.137C>A (p.Ser46Tyr)]

NM_018713.3(SLC30A10):c.137C>A (p.Ser46Tyr)

Gene:
SLC30A10:solute carrier family 30 member 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q41
Genomic location:
Preferred name:
NM_018713.3(SLC30A10):c.137C>A (p.Ser46Tyr)
HGVS:
  • NC_000001.11:g.219928304G>T
  • NG_032153.2:g.5348C>A
  • NG_032153.3:g.35794C>A
  • NM_001376929.1:c.452-1199C>A
  • NM_001416005.1:c.-577C>A
  • NM_018713.3:c.137C>AMANE SELECT
  • NP_061183.2:p.Ser46Tyr
  • NC_000001.10:g.220101646G>T
  • NM_018713.2:c.137C>A
  • NR_046437.2:n.254C>A
Protein change:
S46Y
Molecular consequence:
  • NM_001416005.1:c.-577C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001376929.1:c.452-1199C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_018713.3:c.137C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hypermanganesemia with dystonia, polycythemia, and cirrhosis (HMNDYT1)
Synonyms:
Hypermanganesemia with dystonia 1; Hepatic Cirrhosis, Dystonia, Polycythemia and Hypermanganesemia; Dystonia/Parkinsonism, Hypermanganesemia, Polycythemia, and Chronic Liver Disease; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0013208; MedGen: C2750442; Orphanet: 309854; OMIM: 613280

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004808104Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Mar 29, 2024) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center, SCV004808104.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 4, 2024