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NM_001943.5(DSG2):c.3059_3062del (p.Glu1020fs) AND Arrhythmogenic right ventricular cardiomyopathy

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 5, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003996627.1

Allele description [Variation Report for NM_001943.5(DSG2):c.3059_3062del (p.Glu1020fs)]

NM_001943.5(DSG2):c.3059_3062del (p.Glu1020fs)

Genes:
DSG2-AS1:DSG2 antisense RNA 1 [Gene - HGNC]
DSG2:desmoglein 2 [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
18q12.1
Genomic location:
Preferred name:
NM_001943.5(DSG2):c.3059_3062del (p.Glu1020fs)
HGVS:
  • NC_000018.10:g.31546441AG[2]
  • NC_000018.9:g.29126408_29126411del
  • NG_007072.3:g.53200AG[2]
  • NM_001943.5:c.3059_3062delMANE SELECT
  • NP_001934.2:p.Glu1020fs
  • LRG_397t1:c.3059_3062del
  • LRG_397:g.53200AG[2]
  • NC_000018.10:g.31546441_31546444delAGAG
  • NC_000018.9:g.29126404AG[2]
  • NC_000018.9:g.29126404_29126407del
  • NC_000018.9:g.29126408_29126411del
  • NM_001943.3:c.3059_3062del
  • NM_001943.3:c.3059_3062delAGAG
  • NM_001943.4:c.3059_3062del
Protein change:
E1020fs
Links:
dbSNP: rs397516706
NCBI 1000 Genomes Browser:
rs397516706
Molecular consequence:
  • NM_001943.5:c.3059_3062del - frameshift variant - [Sequence Ontology: SO:0001589]
Observations:
15

Condition(s)

Name:
Arrhythmogenic right ventricular cardiomyopathy (ARVD)
Synonyms:
Cardiomyopathy, ARVC; Arrhythmogenic right ventricular dysplasia
Identifiers:
MONDO: MONDO:0016587; MedGen: C0349788

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004821868All of Us Research Program, National Institutes of Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain Significance
(Feb 5, 2024)
germlineclinical testing

PubMed (12)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown15not providednot provided108544not providedclinical testing

Citations

PubMed

Wide spectrum of desmosomal mutations in Danish patients with arrhythmogenic right ventricular cardiomyopathy.

Christensen AH, Benn M, Bundgaard H, Tybjaerg-Hansen A, Haunso S, Svendsen JH.

J Med Genet. 2010 Nov;47(11):736-44. doi: 10.1136/jmg.2010.077891. Epub 2010 Sep 23.

PubMed [citation]
PMID:
20864495

Population-prevalent desmosomal mutations predisposing to arrhythmogenic right ventricular cardiomyopathy.

Lahtinen AM, Lehtonen E, Marjamaa A, Kaartinen M, Heliƶ T, Porthan K, Oikarinen L, Toivonen L, Swan H, Jula A, Peltonen L, Palotie A, Salomaa V, Kontula K.

Heart Rhythm. 2011 Aug;8(8):1214-21. doi: 10.1016/j.hrthm.2011.03.015. Epub 2011 Mar 10.

PubMed [citation]
PMID:
21397041
See all PubMed Citations (12)

Details of each submission

From All of Us Research Program, National Institutes of Health, SCV004821868.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided15not providednot providedclinical testing PubMed (12)

Description

This variant deletes 4 nucleotides in exon 15 of the DSG2 gene, creating a frameshift in the last exon. The mutant transcript is expected to escape nonsense-mediated decay and be expressed as a protein product containing altered C-terminal sequence. To our knowledge, functional studies have not been reported for this variant. This variant has been identified in eight unrelated individuals affected with arrhythmogenic cardiomyopathy (PMID: 21397041, 20864495, 23381804, 33821670, 34263121, 36431211) and has been reported to segregate with disease in one of the families (PMID: 21397041). This variant has also been observed in individuals affected with conduction defect (PMID: 21397041), hypertrophic cardiomyopathy (PMID: 34500006), or dilated cardiomyopathy (PMID: 36129056), and in unaffected family members (PMID 21397041) as well as in individuals without history of cardiovascular events (PMID: 33968641, 34135346). Furthermore, the variant has been reported in compound heterozygous state with another DSG2 variant in three individual affected with arrhythmogenic cardiomyopathy (PMID: 37418234). This variant has been identified in 9/249404 chromosomes in the general population by the Genome Aggregation Database (gnomAD). Although there is a suspicion for a pathogenic role, the available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown108544not providednot provided15not providednot providednot provided

Last Updated: May 1, 2024