NM_023936.2(MRPS34):c.117G>C (p.Glu39Asp) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 4, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004068861.1

Allele description [Variation Report for NM_023936.2(MRPS34):c.117G>C (p.Glu39Asp)]

NM_023936.2(MRPS34):c.117G>C (p.Glu39Asp)

Genes:

EME2:essential meiotic structure-specific endonuclease subunit 2 [Gene - OMIM - HGNC]
MRPS34:mitochondrial ribosomal protein S34 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16p13.3

Genomic location:

Preferred name:

NM_023936.2(MRPS34):c.117G>C (p.Glu39Asp)

HGVS:

NC_000016.10:g.1773003C>G
NG_192605.1:g.45C>G
NM_001257370.2:c.-225C>GMANE SELECT
NM_001300900.2:c.117G>C
NM_023936.2:c.117G>CMANE SELECT
NP_001287829.1:p.Glu39Asp
NP_076425.1:p.Glu39Asp
NC_000016.9:g.1823004C>G
NM_023936.1:c.117G>C

Protein change:

E39D

Molecular consequence:

NM_001257370.2:c.-225C>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001300900.2:c.117G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_023936.2:c.117G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

Recent activity

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Sargassum obovatum voucher BOL155965 cytochrome oxidase subunit 3 (cox3) gene, p...
Sargassum obovatum voucher BOL155965 cytochrome oxidase subunit 3 (cox3) gene, partial cds; mitochondrial
gi|855198602|gb|KP720487.1|

Nucleotide
lgc-40 Ligand-Gated ion Channel [Caenorhabditis elegans]
lgc-40 Ligand-Gated ion Channel [Caenorhabditis elegans]
Gene ID:188854

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005000456	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 4, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005000456

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 4, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005000456.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.117G>C (p.E39D) alteration is located in exon 1 (coding exon 1) of the MRPS34 gene. This alteration results from a G to C substitution at nucleotide position 117, causing the glutamic acid (E) at amino acid position 39 to be replaced by an aspartic acid (D). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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