NM_003157.6(NEK4):c.1769G>A (p.Arg590His) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 15, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004082322.1

Allele description [Variation Report for NM_003157.6(NEK4):c.1769G>A (p.Arg590His)]

NM_003157.6(NEK4):c.1769G>A (p.Arg590His)

Gene:

NEK4:NIMA related kinase 4 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p21.1

Genomic location:

Preferred name:

NM_003157.6(NEK4):c.1769G>A (p.Arg590His)

HGVS:

NC_000003.12:g.52746119C>T
NG_053026.1:g.29831G>A
NM_001193533.3:c.1502G>A
NM_001348412.2:c.1631G>A
NM_001348413.2:c.1631G>A
NM_001348414.2:c.1523G>A
NM_003157.6:c.1769G>AMANE SELECT
NP_001180462.1:p.Arg501His
NP_001335341.1:p.Arg544His
NP_001335342.1:p.Arg544His
NP_001335343.1:p.Arg508His
NP_003148.2:p.Arg590His
NC_000003.11:g.52780135C>T
NM_003157.4:c.1769G>A

Protein change:

R501H

Molecular consequence:

NM_001193533.3:c.1502G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001348412.2:c.1631G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001348413.2:c.1631G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001348414.2:c.1523G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_003157.6:c.1769G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003538844	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Nov 15, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003538844

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Nov 15, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003538844.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1769G>A (p.R590H) alteration is located in exon 10 (coding exon 10) of the NEK4 gene. This alteration results from a G to A substitution at nucleotide position 1769, causing the arginine (R) at amino acid position 590 to be replaced by a histidine (H). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

ClinVar

Relating variation to medicine