NM_016027.3(LACTB2):c.656T>C (p.Ile219Thr) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Sep 28, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004083376.1

Allele description [Variation Report for NM_016027.3(LACTB2):c.656T>C (p.Ile219Thr)]

NM_016027.3(LACTB2):c.656T>C (p.Ile219Thr)

Genes:

LACTB2-AS1:LACTB2 antisense RNA 1 [Gene - HGNC]
LACTB2:lactamase beta 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

8q13.3

Genomic location:

Preferred name:

NM_016027.3(LACTB2):c.656T>C (p.Ile219Thr)

HGVS:

NC_000008.11:g.70640987A>G
NM_016027.3:c.656T>CMANE SELECT
NP_057111.1:p.Ile219Thr
NC_000008.10:g.71553222A>G
NM_016027.2:c.656T>C

Protein change:

I219T

Molecular consequence:

NM_016027.3:c.656T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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folate-binding protein YgfZ [Methylocaldum marinum]
folate-binding protein YgfZ [Methylocaldum marinum]
gi|1480992065|ref|WP_119628610.1|

Protein
Norovirus Hu/CHN41808/LL04 RNA-dependent RNA polymerase gene, partial cds; and c...
Norovirus Hu/CHN41808/LL04 RNA-dependent RNA polymerase gene, partial cds; and capsid protein and minor structural protein genes, complete cds
gi|253992111|gb|EU072249.2|

Nucleotide
Norovirus Hu/CHN4474/CC01 RNA-dependent RNA polymerase gene, partial cds
Norovirus Hu/CHN4474/CC01 RNA-dependent RNA polymerase gene, partial cds
gi|156139949|gb|EU072337.1|

Nucleotide
Norovirus Hu/CHN43338/LZ05 RNA-dependent RNA polymerase gene, partial cds
Norovirus Hu/CHN43338/LZ05 RNA-dependent RNA polymerase gene, partial cds
gi|156139971|gb|EU072348.1|

Nucleotide
Achlya americana isolate CNUFC-CPWB8-1 cytochrome oxidase subunit II (COII) gene...
Achlya americana isolate CNUFC-CPWB8-1 cytochrome oxidase subunit II (COII) gene, partial cds; mitochondrial
gi|1613887904|gb|MH673798.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003542101	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Sep 28, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003542101

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Sep 28, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003542101.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.656T>C (p.I219T) alteration is located in exon 5 (coding exon 5) of the LACTB2 gene. This alteration results from a T to C substitution at nucleotide position 656, causing the isoleucine (I) at amino acid position 219 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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