NM_001386096.1(OR2A25):c.608T>C (p.Val203Ala) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 26, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004087804.1

Allele description [Variation Report for NM_001386096.1(OR2A25):c.608T>C (p.Val203Ala)]

NM_001386096.1(OR2A25):c.608T>C (p.Val203Ala)

Gene:

OR2A25:olfactory receptor family 2 subfamily A member 25 [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q35

Genomic location:

Preferred name:

NM_001386096.1(OR2A25):c.608T>C (p.Val203Ala)

HGVS:

NC_000007.14:g.144074827T>C
NM_001004488.2:c.608T>C
NM_001386096.1:c.608T>CMANE SELECT
NP_001004488.1:p.Val203Ala
NP_001373025.1:p.Val203Ala
NC_000007.13:g.143771920T>C
NM_001004488.1:c.608T>C

Protein change:

V203A

Molecular consequence:

NM_001004488.2:c.608T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001386096.1:c.608T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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RecName: Full=Prosaposin; AltName: Full=Sulfated glycoprotein 1; Short=SGP-1; Co...
RecName: Full=Prosaposin; AltName: Full=Sulfated glycoprotein 1; Short=SGP-1; Contains: RecName: Full=Saposin-A; Contains: RecName: Full=Saposin-B-Val; Contains: RecName: Full=Saposin-B; Contains: RecName: Full=Saposin-C; Contains: RecName: Full=Saposin-D; Flags: Precursor
gi|134219|sp|P10960.1|SAP_RAT

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003537688	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 26, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003537688

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 26, 2022)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003537688.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.608T>C (p.V203A) alteration is located in exon 1 (coding exon 1) of the OR2A25 gene. This alteration results from a T to C substitution at nucleotide position 608, causing the valine (V) at amino acid position 203 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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