NM_019852.5(METTL3):c.1685T>C (p.Val562Ala) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 27, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004119327.1

Allele description [Variation Report for NM_019852.5(METTL3):c.1685T>C (p.Val562Ala)]

NM_019852.5(METTL3):c.1685T>C (p.Val562Ala)

Genes:

TOX4:TOX high mobility group box family member 4 [Gene - OMIM - HGNC]
METTL3:methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

14q11.2

Genomic location:

Preferred name:

NM_019852.5(METTL3):c.1685T>C (p.Val562Ala)

HGVS:

NC_000014.9:g.21498316A>G
NM_001303523.2:c.*1710A>G
NM_014828.4:c.*1710A>GMANE SELECT
NM_019852.5:c.1685T>CMANE SELECT
NP_062826.2:p.Val562Ala
NC_000014.8:g.21966460A>G
NM_019852.3:c.1685T>C

Protein change:

V562A

Molecular consequence:

NM_001303523.2:c.*1710A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_014828.4:c.*1710A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_019852.5:c.1685T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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PREDICTED: Homo sapiens F-box and WD repeat domain containing 10 (FBXW10), trans...
PREDICTED: Homo sapiens F-box and WD repeat domain containing 10 (FBXW10), transcript variant X5, mRNA
gi|2217309384|ref|XM_047435125.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003590830	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Feb 27, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003590830

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Feb 27, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003590830.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1685T>C (p.V562A) alteration is located in exon 11 (coding exon 11) of the METTL3 gene. This alteration results from a T to C substitution at nucleotide position 1685, causing the valine (V) at amino acid position 562 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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