NM_138574.4(HDGFL1):c.478C>T (p.Pro160Ser) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Sep 17, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004145978.1

Allele description [Variation Report for NM_138574.4(HDGFL1):c.478C>T (p.Pro160Ser)]

NM_138574.4(HDGFL1):c.478C>T (p.Pro160Ser)

Gene:

HDGFL1:HDGF like 1 [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

6p22.3

Genomic location:

Preferred name:

NM_138574.4(HDGFL1):c.478C>T (p.Pro160Ser)

HGVS:

NC_000006.12:g.22570053C>T
NM_138574.4:c.478C>TMANE SELECT
NP_612641.2:p.Pro160Ser
NC_000006.11:g.22570282C>T
NM_138574.2:c.478C>T

Protein change:

P160S

Molecular consequence:

NM_138574.4:c.478C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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txid247322[Organism:exp] (2)
Nucleotide
MAG TPA_asm: Roseovarius sp. UBA7808, whole genome shotgun sequencing project
MAG TPA_asm: Roseovarius sp. UBA7808, whole genome shotgun sequencing project
gi|1252357080|tpg|DLCC00000000.1|DL 00000

Nucleotide
ribonuclease P protein subunit p25-like protein [Cucumis sativus]
ribonuclease P protein subunit p25-like protein [Cucumis sativus]
gi|449437182|ref|XP_004136371.1|

Protein
LOC129456121 [Misgurnus anguillicaudatus]
LOC129456121 [Misgurnus anguillicaudatus]
Gene ID:129456121

Gene
LOC129456108 [Misgurnus anguillicaudatus]
LOC129456108 [Misgurnus anguillicaudatus]
Gene ID:129456108

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003621508	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Sep 17, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003621508

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Sep 17, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003621508.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.478C>T (p.P160S) alteration is located in exon 1 (coding exon 1) of the HDGFL1 gene. This alteration results from a C to T substitution at nucleotide position 478, causing the proline (P) at amino acid position 160 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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