NR_172488.1(LRRC29):n.894C>A AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 29, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004172369.1

Allele description [Variation Report for NR_172488.1(LRRC29):n.894C>A]

NR_172488.1(LRRC29):n.894C>A

Gene:

LRRC29:leucine rich repeat containing 29 [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16q22.1

Genomic location:

Preferred name:

NR_172488.1(LRRC29):n.894C>A

Other names:

NM_012163.2:c.607C>A

HGVS:

NC_000016.10:g.67207670G>T
NG_134059.1:g.288G>T
NC_000016.9:g.67241573G>T
NR_172488.1:n.894C>A
NR_172489.1:n.1016C>A
NR_172490.1:n.1016C>A

Molecular consequence:

NR_172488.1:n.894C>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_172489.1:n.1016C>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_172490.1:n.1016C>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

Clear Turn Off Turn On

Mobiluncus porci strain RF-GAM-744-WT-7, whole genome shotgun sequencing project
Mobiluncus porci strain RF-GAM-744-WT-7, whole genome shotgun sequencing project
gi|1777457088|gb|VUMY00000000.1|VUM 0000

Nucleotide
Porcincola intestinalis strain Oil+RF-744-WCA-WT-11, whole genome shotgun sequen...
Porcincola intestinalis strain Oil+RF-744-WCA-WT-11, whole genome shotgun sequencing project
gi|1777457033|gb|VULZ00000000.1|VUL 0000

Nucleotide
Roseburia porci strain MUC/MUC-530-WT-4D, whole genome shotgun sequencing projec...
Roseburia porci strain MUC/MUC-530-WT-4D, whole genome shotgun sequencing project
gi|1777457102|gb|VUNI00000000.1|VUN 0000

Nucleotide
PREDICTED: Mus musculus RNA polymerase II associated protein 1 (Rpap1), transcri...
PREDICTED: Mus musculus RNA polymerase II associated protein 1 (Rpap1), transcript variant X4, mRNA
gi|1907143156|ref|XM_036162532.1|

Nucleotide
PREDICTED: Branchiostoma belcheri protein FAM234B-like (LOC109462124), mRNA
PREDICTED: Branchiostoma belcheri protein FAM234B-like (LOC109462124), mRNA
gi|1126228666|ref|XM_019758622.1|

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003657960	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 29, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003657960

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 29, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003657960.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.607C>A (p.L203M) alteration is located in exon 6 (coding exon 4) of the LRRC29 gene. This alteration results from a C to A substitution at nucleotide position 607, causing the leucine (L) at amino acid position 203 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

ClinVar

Relating variation to medicine