NM_005656.4(TMPRSS2):c.778G>A (p.Glu260Lys) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Aug 23, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004206755.1

Allele description [Variation Report for NM_005656.4(TMPRSS2):c.778G>A (p.Glu260Lys)]

NM_005656.4(TMPRSS2):c.778G>A (p.Glu260Lys)

Gene:

TMPRSS2:transmembrane serine protease 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

21q22.3

Genomic location:

Preferred name:

NM_005656.4(TMPRSS2):c.778G>A (p.Glu260Lys)

HGVS:

NC_000021.9:g.41473446C>T
NG_047085.2:g.62671G>A
NM_001135099.1:c.889G>A
NM_001382720.1:c.778G>A
NM_005656.4:c.778G>AMANE SELECT
NP_001128571.1:p.Glu297Lys
NP_001369649.1:p.Glu260Lys
NP_005647.3:p.Glu260Lys
LRG_1368t1:c.778G>A
LRG_1368:g.62671G>A
LRG_1368p1:p.Glu260Lys
NC_000021.8:g.42845373C>T

Protein change:

E260K

Molecular consequence:

NM_001135099.1:c.889G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001382720.1:c.778G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_005656.4:c.778G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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CAP-Gly domain-containing linker protein 2 isoform 1 [Homo sapiens]
CAP-Gly domain-containing linker protein 2 isoform 1 [Homo sapiens]
gi|1714206204|ref|NP_003379.4|

Protein
SLC25A35 solute carrier family 25 member 35 [Homo sapiens]
SLC25A35 solute carrier family 25 member 35 [Homo sapiens]
Gene ID:399512

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003710678	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Aug 23, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003710678

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Aug 23, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003710678.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.889G>A (p.E297K) alteration is located in exon 9 (coding exon 9) of the TMPRSS2 gene. This alteration results from a G to A substitution at nucleotide position 889, causing the glutamic acid (E) at amino acid position 297 to be replaced by a lysine (K). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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