NM_152339.4(SPATA2L):c.841C>T (p.Pro281Ser) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Apr 7, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004207295.1

Allele description [Variation Report for NM_152339.4(SPATA2L):c.841C>T (p.Pro281Ser)]

NM_152339.4(SPATA2L):c.841C>T (p.Pro281Ser)

Gene:

SPATA2L:spermatogenesis associated 2 like [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16q24.3

Genomic location:

Preferred name:

NM_152339.4(SPATA2L):c.841C>T (p.Pro281Ser)

HGVS:

NC_000016.10:g.89697768G>A
NM_152339.4:c.841C>TMANE SELECT
NP_689552.2:p.Pro281Ser
NC_000016.9:g.89764176G>A
NM_152339.3:c.841C>T

Protein change:

P281S

Molecular consequence:

NM_152339.4:c.841C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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C33152 Yuji Kohara unpublished cDNA:Strain N2 hermaphrodite embryo Caenorhabditi...
C33152 Yuji Kohara unpublished cDNA:Strain N2 hermaphrodite embryo Caenorhabditis elegans cDNA clone yk341f2 3', mRNA sequence
gi|2364948|gnl|dbEST|1239849|dbj|C3 1|

Nucleotide
Diderma spumarioides strain MM46870 elongation factor 1-alpha (EF1a) gene, parti...
Diderma spumarioides strain MM46870 elongation factor 1-alpha (EF1a) gene, partial cds
gi|2574169411|gb|OP631020.1|

Nucleotide
PREDICTED: Homo sapiens tescalcin (TESC), transcript variant X2, mRNA
PREDICTED: Homo sapiens tescalcin (TESC), transcript variant X2, mRNA
gi|2217289675|ref|XM_047429044.1|

Nucleotide
phf-15 PHD-type domain-containing protein [Caenorhabditis elegans]
phf-15 PHD-type domain-containing protein [Caenorhabditis elegans]
Gene ID:175435

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003706645	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Apr 7, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003706645

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Apr 7, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003706645.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.841C>T (p.P281S) alteration is located in exon 3 (coding exon 2) of the SPATA2L gene. This alteration results from a C to T substitution at nucleotide position 841, causing the proline (P) at amino acid position 281 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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