NM_000201.3(ICAM1):c.400C>T (p.Arg134Cys) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 27, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004296608.1

Allele description [Variation Report for NM_000201.3(ICAM1):c.400C>T (p.Arg134Cys)]

NM_000201.3(ICAM1):c.400C>T (p.Arg134Cys)

Gene:

ICAM1:intercellular adhesion molecule 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19p13.2

Genomic location:

Preferred name:

NM_000201.3(ICAM1):c.400C>T (p.Arg134Cys)

HGVS:

NC_000019.10:g.10283549C>T
NG_007728.1:g.1576C>T
NG_012083.1:g.17709C>T
NM_000201.3:c.400C>TMANE SELECT
NP_000192.2:p.Arg134Cys
LRG_809:g.1576C>T
NC_000019.9:g.10394225C>T
NM_000201.2:c.400C>T

Protein change:

R134C

Molecular consequence:

NM_000201.3:c.400C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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LOC100910179 peptidoglycan recognition protein 4-like [Rattus norvegicus]
LOC100910179 peptidoglycan recognition protein 4-like [Rattus norvegicus]
Gene ID:100910179

Gene
Reticulocyte Count
Reticulocyte Count
The number of RETICULOCYTES per unit volume of BLOOD. The values are expressed as a percentage of the ERYTHROCYTE COUNT or in the form of an index (corrected reticulocyte inde...<br/>Year introduced: 1994

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003953170	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 27, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003953170

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 27, 2023)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003953170.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.400C>T (p.R134C) alteration is located in exon 3 (coding exon 3) of the ICAM1 gene. This alteration results from a C to T substitution at nucleotide position 400, causing the arginine (R) at amino acid position 134 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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